PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.253390.1 | ||||||||
Common Name | Csa_3G152140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 380aa MW: 40064 Da PI: 9.0654 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.6e-08 | 1 | 18 | 10 | 27 |
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 +rtG Ck+G++Ck++H++ Cucsa.253390.1 1 MRTGMCKFGASCKYHHPQ 18 8***************97 PP | |||||||
2 | zf-CCCH | 36.6 | 7.6e-12 | 39 | 64 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++G+Ck+G++CkF+H++ Cucsa.253390.1 39 GEKECSYYLKNGQCKFGATCKFHHPE 64 7899********************96 PP | |||||||
3 | zf-CCCH | 39.3 | 1.1e-12 | 202 | 228 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p Cucsa.253390.1 202 PGQPECQYYMRTGDCKFGSSCRYHHPP 228 5789*********************97 PP | |||||||
4 | zf-CCCH | 34 | 4.9e-11 | 250 | 274 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G Ck+G+ CkF H++ Cucsa.253390.1 250 APPCTHFMQRGMCKFGPACKFDHSM 274 689********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 34 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-5 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.3 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 2 | 20 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-6 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.61 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 39 | 65 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 39 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 43 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.37 | 201 | 229 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 201 | 228 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-10 | 203 | 228 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-6 | 205 | 228 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 207 | 228 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-7 | 247 | 274 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.469 | 247 | 275 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.9E-8 | 250 | 273 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 251 | 278 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 252 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MRTGMCKFGA SCKYHHPQQE RGSLSPVSLN FYGYPLRPGE KECSYYLKNG QCKFGATCKF 60 HHPEPAGLQF PAPSPVQVAP IAGQVPAPSV YPPVQSPSAH SSQQYGVILA RPSLLSNPYV 120 PGPYGPMLVS PGVVQFPSWS PYPAPMSPVA SPSAQPSVGS GPLYGMAHVS PSASGFAGSY 180 QPMPSTGPSS TSQKEHSFPE RPGQPECQYY MRTGDCKFGS SCRYHHPPEL VTSRPSVVLS 240 QLGLPLRPGA PPCTHFMQRG MCKFGPACKF DHSMDRLSYS PSASSLADMP VAPYPVGSVA 300 GTLAPSSSSS ELRPEHFSGS RKDSNPSRMS SSMSTSSGLV SSTTSRTEMH SLSSVQRSSQ 360 SSGPSVGSTS STTSAEGRT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134198.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34 | ||||
Swissprot | Q5NAW2 | 1e-112 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | A0A0A0L8Z3 | 0.0 | A0A0A0L8Z3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004134198.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 6e-99 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.253390.1 |