PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.253300.3 | ||||||||
Common Name | Csa_3G153150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 1162aa MW: 128867 Da PI: 8.8432 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.5e-09 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e++++a +++G++ Wk++a+ + +R+ +++ Cucsa.253300.3 46 QWSKDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 81 6*****************99.*********.**98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-9 | 42 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.157 | 42 | 95 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-4 | 43 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-6 | 46 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-8 | 46 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.98E-6 | 47 | 81 | No hit | No description |
Pfam | PF06584 | 1.1E-31 | 629 | 729 | IPR033471 | DIRP domain |
SMART | SM01135 | 2.7E-56 | 629 | 730 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1162 aa Download sequence Send to blast |
MAPSRKSRSV NKRFSSANEA SSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR 60 KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLRDSES 120 EQESNEDSGA IRKPQKRLRG KSRSSNLKGS DAHFGDASQS QLLLTNYGCL SLLKKRRSGI 180 KPHAVGKRTP RVPVSYSYDK DGRDKLFSPS KHNSKAKVDD PNDDDVAHEI ALVLTEASQR 240 DGSPQLSQTP NPKIESHVLS PIRNDRMRSE SDMMSTKFRC SEMDEGGCEL SLGSTGADNA 300 DYDLGKSTRE VQRKGKRYYG KKPEVEESMY NHLDDIKEAC SGTEEGQKSG SLRGKLENED 360 LDVKSVRSSF KGPRKRSKKA LFGDECSAFD ALQTLADLSL MMPDTNAETE PPAKVKEENL 420 DVMGKSKMKG SHSVAGSEIS ALKTSKTGKA FGSNVGPISE AEGIQGSNNG NRKRKLKSSP 480 FKISSKDEDN DSRLHDTLKI KAADEAKSSV GKVKRSPHNA GLKSGKISKP LDHHSSSSTD 540 HKREDGDYAL STAQVLSNNP VSLPTKLRSR RKMKLWKSQR DAKISDSTSI DQLNITAQTI 600 DDRQHDLKER HSSCLSWHKL RRWCIFEWFY SAIDFPWFAK CEFVEYLNHV GLGHIPRLTR 660 VEWGVIRSSL GRPRRFSAQF LKEEKQKLNQ YRESVRKHYA ELRAGTREGL PTDLARPLSV 720 GQRVIAIHPK TREIHDGSVL TVDYSRCRVQ FDRPELGVEF VMDIECMPLN PVENMPANLS 780 RHGVTLDKIF GNLNEVKING LLKEAKIEDY MKSTSNDKLE STEGSVYISP STHHINKLIK 840 QAKVDLGCSN LQAKFGLSET VGIQQETSSQ PSALAQIQAK EADVHALSEL SRALDKKEVV 900 VSELKRLNDE VLENQINGDN LLKDSVNFKK QYAAVLLQLN EVNEQVSSAL YCLRQRNTYQ 960 GTSPLMFLKP VHDSGDPCSH SQEPGSHVAE IVGSSRAKAQ TMIDEAMQAI LALKKGESNL 1020 ENIEEAIDFV SNRLTVDDLA LPTVRSAAAD TSNAAPVSQN HFNACTSNTS TASFVVGPKS 1080 NGSSDKTEME IPSELIAHCV ATLLMIQKCT ERQFPPSDVA QVLDSAVSSL QPCCPQNLPL 1140 YAEIQKCMGI IRSQILALIP T* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-177 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-177 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134200.2 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
Swissprot | Q6A332 | 0.0 | ALY3_ARATH; Protein ALWAYS EARLY 3 | ||||
TrEMBL | A0A0A0L571 | 0.0 | A0A0A0L571_CUCSA; Uncharacterized protein | ||||
STRING | XP_004159845.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.253300.3 |
Publications ? help Back to Top | |||
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