PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.252810.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 287aa    MW: 32128 Da    PI: 8.7891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.252810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.5e-21152202155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+G+r+++ +g+W+AeIrdp++     r++lg++ t+eeAa+a+++a+ +++g
  Cucsa.252810.1 152 SKYRGIRQRP-WGKWAAEIRDPRK---GLRVWLGTYNTPEEAARAYDQAAIRIRG 202
                     89********.**********954...3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.68E-35152209No hitNo description
SuperFamilySSF541713.4E-23152211IPR016177DNA-binding domain
PfamPF008471.4E-14152202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-33153210IPR001471AP2/ERF domain
SMARTSM003806.1E-40153216IPR001471AP2/ERF domain
PROSITE profilePS5103224.777153210IPR001471AP2/ERF domain
PRINTSPR003676.4E-11154165IPR001471AP2/ERF domain
PRINTSPR003676.4E-11176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSICQIVGNF LLRYNRHLLF SSIINLSFLS LSFSFFSSPH SSFSQFLILF VLSPLSLQPP  60
TMCGGAIISD YVEPNPVVVD NLLWPDLDTT FSDLLGLDLI TQTQNYPFNN TTSPNVVDNN  120
IPKQLSQVKK EKVEGNEVGR GEMKKPQKVR KSKYRGIRQR PWGKWAAEIR DPRKGLRVWL  180
GTYNTPEEAA RAYDQAAIRI RGKKAKLNFP PPLPSPPLLS VPLSLPPSPP QQQLPTTSTP  240
IDVELKHQIS TLESFLGLDP SPPVEPTADL WWVDDLLACQ QQNLQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-24154210663ATERF1
3gcc_A2e-24154210663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-160LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-160LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134228.11e-163PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A0A0L7Z61e-162A0A0A0L7Z6_CUCSA; Uncharacterized protein
STRINGXP_004134228.11e-163(Cucumis sativus)
STRINGXP_004162201.11e-163(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-35ethylene-responsive element binding protein