PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.251920.4

Common Name

Csa_3G172410

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 1070aa MW: 116510 Da PI: 4.2939

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.251920.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	14	36	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H Cucsa.251920.4 14 HVCNKCGWPFPNPHPSAKHRRAH 36 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	16	36	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1070 aa Download sequence Send to blast
MEHRDQRQEN HGVHVCNKCG WPFPNPHPSA KHRRAHKRVC GTIEGFKLVE SEANALLTVV 60 SDDDVDDKIS SPKVLGGRCG DDSVGMKTKS KESEDEVFSD AVAEFSESVG PKKPMGDALD 120 SSAAKMVVEE EISSSQTLKD KEVLVIAETT INQSGCEQEK KVNQEFVNIE TESKTPLSSS 180 STENQKDESS VAAETEIDQL GNEQETKVNR ELVDLETSST STENQNVENS VVVETEQENK 240 INQLYGNLET NFRHENSMIP SIDHINTTTT TGDLYPNDPD TIVTALEQPQ YSLLSPDRIC 300 DDEDFDSCKN STEVAAASEK IDSDESGPSP KMEETIEIST EPLAHDGTFQ LVVDNDMSIH 360 SEIPQSVLSA ANPQSVVVSD VKPIDLTQVT YDTGKELESC SSNNLLETDI IKGENDNVHL 420 PSVSSDLNTL DHPEALVEEL ENHKEVKLTS CVVQDPHGGV SGLKDKSKDP IPKGSYFNLQ 480 AEPFDQVASF DTKIMESRQK QEEVVKNVSV DVKGDCSSHS GQEAAEIPIQ ETNAAQIKNL 540 LSENEGHSKS QILSDVAIGI GSIPSASLSS EVESVAPSKN SLDNLSDNVT EVLFSEVERG 600 EVLLQDDENK EGACGRDFED TVQIHLPVDA HERKDNFVNE KDKFDNLYIA GVEDKKDPPE 660 EKFSMGIDAT PEPATTNKEN QCIAVAEEIA EESPRKISLI ESIGSRKFDT SLVSDTQESV 720 KENDCSSFVH VVCPTEVNAD YGQYHIGDSN SVQDSSVVHA IANREGNLVS VSNETVAGKS 780 DTFQDGSVTQ LAGDGVASET WKDDGAKTDA PKTDVKPQLT SSLLDASVDA ISQTDSLEGN 840 WGSVSGTVLS TQSDLLAVVD GEVTPQARAG AEETDLRKAN AAPERQHSDR SDLFEPPSFM 900 TLVEPNGGGI PNSATTEIQT ARNREQPNPT SLQAGWFPSY THVANDSPGR KKNEAIIAKV 960 TNWSAGKPHT ALKNLLDDAA LENKQKSSPT QKDNLASMIQ KDEKPMKKVD SIPKKVDSIA 1020 LPNSPTSQLV NREFANEWNS PARYPSDIRR ERRKGRPYWA QFVCCSSVH*

Sequence ? help Back to Top

Protein Sequence Length: 1070 aa Download sequence Send to blast

MEHRDQRQEN HGVHVCNKCG WPFPNPHPSA KHRRAHKRVC GTIEGFKLVE SEANALLTVV  60
SDDDVDDKIS SPKVLGGRCG DDSVGMKTKS KESEDEVFSD AVAEFSESVG PKKPMGDALD  120
SSAAKMVVEE EISSSQTLKD KEVLVIAETT INQSGCEQEK KVNQEFVNIE TESKTPLSSS  180
STENQKDESS VAAETEIDQL GNEQETKVNR ELVDLETSST STENQNVENS VVVETEQENK  240
INQLYGNLET NFRHENSMIP SIDHINTTTT TGDLYPNDPD TIVTALEQPQ YSLLSPDRIC  300
DDEDFDSCKN STEVAAASEK IDSDESGPSP KMEETIEIST EPLAHDGTFQ LVVDNDMSIH  360
SEIPQSVLSA ANPQSVVVSD VKPIDLTQVT YDTGKELESC SSNNLLETDI IKGENDNVHL  420
PSVSSDLNTL DHPEALVEEL ENHKEVKLTS CVVQDPHGGV SGLKDKSKDP IPKGSYFNLQ  480
AEPFDQVASF DTKIMESRQK QEEVVKNVSV DVKGDCSSHS GQEAAEIPIQ ETNAAQIKNL  540
LSENEGHSKS QILSDVAIGI GSIPSASLSS EVESVAPSKN SLDNLSDNVT EVLFSEVERG  600
EVLLQDDENK EGACGRDFED TVQIHLPVDA HERKDNFVNE KDKFDNLYIA GVEDKKDPPE  660
EKFSMGIDAT PEPATTNKEN QCIAVAEEIA EESPRKISLI ESIGSRKFDT SLVSDTQESV  720
KENDCSSFVH VVCPTEVNAD YGQYHIGDSN SVQDSSVVHA IANREGNLVS VSNETVAGKS  780
DTFQDGSVTQ LAGDGVASET WKDDGAKTDA PKTDVKPQLT SSLLDASVDA ISQTDSLEGN  840
WGSVSGTVLS TQSDLLAVVD GEVTPQARAG AEETDLRKAN AAPERQHSDR SDLFEPPSFM  900
TLVEPNGGGI PNSATTEIQT ARNREQPNPT SLQAGWFPSY THVANDSPGR KKNEAIIAKV  960
TNWSAGKPHT ALKNLLDDAA LENKQKSSPT QKDNLASMIQ KDEKPMKKVD SIPKKVDSIA  1020
LPNSPTSQLV NREFANEWNS PARYPSDIRR ERRKGRPYWA QFVCCSSVH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651106.1	0.0	PREDICTED: uncharacterized protein LOC101215780
TrEMBL	A0A0A0LAY3	0.0	A0A0A0LAY3_CUCSA; Uncharacterized protein
STRING	XP_004147674.1	0.0	(Cucumis sativus)

Link Out ? help Back to Top
Phytozome	Cucsa.251920.4

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]