PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.251140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22684.3 Da    PI: 10.1608
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.251140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.4e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdae+aviifs++g+lye++s
  Cucsa.251140.1  9 KRIENATSRQVTFSKRRNGVLKKAYELSVLCDAEIAVIIFSQKGRLYEFAS 59
                    79***********************************************86 PP

2K-box63.76.8e-2280171697
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +++ + +  ++l+ e++ ++k++e ++ ++R+llG +L+++sl eL+ L  qL++sl +iR++K +l+ eqi++lq+kek l een+ L+ k
  Cucsa.251140.1  80 DTKFDRQLLQQLRLEVESINKQMELMRLSHRKLLGYGLDNCSLDELEVLDAQLQRSLFQIRARKAQLYNEQIQQLQEKEKLLLEENRILSLK 171
                     444667778999***************************************************************************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.212161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-32375IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-31323IPR002100Transcription factor, MADS-box
CDDcd002655.94E-42378No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.60488178IPR002487Transcription factor, K-box
PfamPF014861.4E-1989171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVRGKVEMKR IENATSRQVT FSKRRNGVLK KAYELSVLCD AEIAVIIFSQ KGRLYEFASS  60
EMPKIMDRYR KCTKDAKNND TKFDRQLLQQ LRLEVESINK QMELMRLSHR KLLGYGLDNC  120
SLDELEVLDA QLQRSLFQIR ARKAQLYNEQ IQQLQEKEKL LLEENRILSL KAAVKGGAAT  180
HGCRSSSSSL VNTQLSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-20192189MEF2 CHIMERA
6byy_B4e-20192189MEF2 CHIMERA
6byy_C4e-20192189MEF2 CHIMERA
6byy_D4e-20192189MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818483e-85LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132603e-85LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150307.11e-141PREDICTED: agamous-like MADS-box protein AGL19 isoform X1
SwissprotQ9FIS12e-66AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A1S3AXN71e-120A0A1S3AXN7_CUCME; MADS-box protein AGL42-like isoform X2
STRINGXP_004169301.11e-141(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.34e-58AGAMOUS-like 42