PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.251140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22684.3 Da PI: 10.1608 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.3 | 5.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdae+aviifs++g+lye++s Cucsa.251140.1 9 KRIENATSRQVTFSKRRNGVLKKAYELSVLCDAEIAVIIFSQKGRLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 63.7 | 6.8e-22 | 80 | 171 | 6 | 97 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ + + ++l+ e++ ++k++e ++ ++R+llG +L+++sl eL+ L qL++sl +iR++K +l+ eqi++lq+kek l een+ L+ k Cucsa.251140.1 80 DTKFDRQLLQQLRLEVESINKQMELMRLSHRKLLGYGLDNCSLDELEVLDAQLQRSLFQIRARKAQLYNEQIQQLQEKEKLLLEENRILSLK 171 444667778999***************************************************************************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.212 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-32 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.94E-42 | 3 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.604 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-19 | 89 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MVRGKVEMKR IENATSRQVT FSKRRNGVLK KAYELSVLCD AEIAVIIFSQ KGRLYEFASS 60 EMPKIMDRYR KCTKDAKNND TKFDRQLLQQ LRLEVESINK QMELMRLSHR KLLGYGLDNC 120 SLDELEVLDA QLQRSLFQIR ARKAQLYNEQ IQQLQEKEKL LLEENRILSL KAAVKGGAAT 180 HGCRSSSSSL VNTQLSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-20 | 1 | 92 | 1 | 89 | MEF2 CHIMERA |
6byy_B | 4e-20 | 1 | 92 | 1 | 89 | MEF2 CHIMERA |
6byy_C | 4e-20 | 1 | 92 | 1 | 89 | MEF2 CHIMERA |
6byy_D | 4e-20 | 1 | 92 | 1 | 89 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 3e-85 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 3e-85 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150307.1 | 1e-141 | PREDICTED: agamous-like MADS-box protein AGL19 isoform X1 | ||||
Swissprot | Q9FIS1 | 2e-66 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | A0A1S3AXN7 | 1e-120 | A0A1S3AXN7_CUCME; MADS-box protein AGL42-like isoform X2 | ||||
STRING | XP_004169301.1 | 1e-141 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF666 | 30 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 4e-58 | AGAMOUS-like 42 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.251140.1 |