PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.251000.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 465aa    MW: 52301.9 Da    PI: 9.4887
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.251000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.67.6e-25187240155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k ++ Wt+ LH+rF++a++ + G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Cucsa.251000.1 187 KSKVIWTNSLHNRFLQAIKLI-GLHKAVPKKILEFMNVPGLTRENVASHLQKYRI 240
                     57899**************99.********************************6 PP
2Response_reg68.72.5e-23111171107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vdD+ + + ++  +l+  +y +v + +d+ eal++l++++  +Dl+++D+ mp+m+Gl+l k+  +e  klp+i+++a ++++ +l+ l+ G
  Cucsa.251000.1  11 ILLVDDDATSLAIVSAMLRLCKY-QVVTLKDPIEALDTLRARKgyFDLVVTDLHMPQMNGLQLQKKVMQEF-KLPVIMMSADEKPSVILKSLEEG 103
                     89*********************.9999***********998888**********************9988.9********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     +  + +Kp++ +++
  Cucsa.251000.1 104 VAFYMVKPISLDDV 117
                     *********99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004485.5E-249121IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.8E-339144No hitNo description
SuperFamilySSF521725.27E-319133IPR011006CheY-like superfamily
PROSITE profilePS5011037.2410125IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-2011118IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.04E-2512125No hitNo description
PROSITE profilePS5129410.2182243IPR017930Myb domain
SuperFamilySSF466892.51E-19185244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-24186244IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-25187240IPR006447Myb domain, plants
PfamPF002496.3E-6192239IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDRKLLVDIH ILLVDDDATS LAIVSAMLRL CKYQVVTLKD PIEALDTLRA RKGYFDLVVT  60
DLHMPQMNGL QLQKKVMQEF KLPVIMMSAD EKPSVILKSL EEGVAFYMVK PISLDDVKHV  120
WQYAITPKNV IPNQTTTTVI QRQLSIDKSS SSSTPCSEKE IIKSKSRSSK FKNNKAKQNS  180
INIPIRKSKV IWTNSLHNRF LQAIKLIGLH KAVPKKILEF MNVPGLTREN VASHLQKYRI  240
FLKRVAEKGT HSINIYSDYT LSTSNFANSS HSQFQSHLFT PKFQPQNSHS FLQNKLHLMT  300
SLNFQCPNPN LEGHSLPYLG NQNHSSHLLI LNKPNFPSNM NSISSSTQND QNIAPMENEN  360
PKCSSDGTGM TVTGKDQMIF LGQDNEAFVE NFQGKQKNLP VVSNKNMESG SFLVSSKEEG  420
KAAADHTIAF EDIGGENYQN CFDVLSEIFM GHNHNQAPLR VNVW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18186246464ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439164.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A0A0LBA40.0A0A0A0LBA4_CUCSA; Uncharacterized protein
STRINGXP_004140855.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.12e-48response regulator 21