PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.250870.1

Common Name

Csa_3G180430, LOC101218216

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 784aa MW: 86189.9 Da PI: 5.9503

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.250870.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.2e-21	87	142	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++eLe +F+++++p+ ++r eL+++lgL+++qVk+WFqNrR+++k Cucsa.250870.1 87 RKKYHRHTPHQIQELEIFFKECPHPDDKQRNELSRRLGLETKQVKFWFQNRRTQMK 142 7999*************************************************999 PP
2	START	175.8	2.6e-55	295	515	2	205
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++elvk+a+ + p+W +s+ e +n de+ ++f++s + ++ea r++++v+ ++ lve+l+d + +W e+++ +a+t+ Cucsa.250870.1 295 LALAAMNELVKMAQMDGPLWIRSRadsgkETLNLDEYSRTFPSSAGmkhtnWTTEATRDTTMVIINSLALVETLMDAN-RWAEMFPcliaRATTT 388 6899**********************99*******999889999************************.************ PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +vissg galqlm ael +lsplvp R f+R+++q+ +g w++vdvS+ + ++ + s+ +++lpSg+++++++ng skvtwveh+ Cucsa.250870.1 389 DVISSGmggtrnGALQLMHAELRVLSPLVPvRTLKFLRFCKQHADGLWAVVDVSIGEGSNSN---SFSGCKRLPSGCVVQDMPNGFSKVTWVEHT 480 ******************************************************9966...799999******************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++++ ++h+l+r+l++sg +g ++w+atlqrqc Cucsa.250870.1 481 EYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCD 515 *******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.05E-20	71	144	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-22	73	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.491	84	144	IPR001356	Homeobox domain
SMART	SM00389	4.3E-20	86	148	IPR001356	Homeobox domain
CDD	cd00086	2.89E-20	87	144	No hit	No description
Pfam	PF00046	7.9E-19	87	142	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	38.227	285	519	IPR002913	START domain
SuperFamily	SSF55961	2.06E-28	286	516	No hit	No description
CDD	cd08875	2.27E-111	294	514	No hit	No description
SMART	SM00234	4.0E-34	294	516	IPR002913	START domain
Pfam	PF01852	1.7E-47	295	515	IPR002913	START domain
SuperFamily	SSF55961	6.18E-17	544	777	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MPGGAITDPS FLPYPIPSSM PSSSEFSSSL RKMDGYGEVC LLGDGFDPTG IVRIREDEYD 60 SRSGSDNIDG AVSGDDHDAN DEQPPKRKKY HRHTPHQIQE LEIFFKECPH PDDKQRNELS 120 RRLGLETKQV KFWFQNRRTQ MKTQIERHEN AILKQENDKL RAENSVMKDA ISNPTCSTCG 180 GPSIPVHLSF EEHQLRIENA RLREELHRLY AVTNKFLGWP VVPFANHGSS PSSDSCLELS 240 VGRNGPGNLS TVSDSMGLNL GNELFSAGSV MPISKPDIGM LTNDIPLERT IYVDLALAAM 300 NELVKMAQMD GPLWIRSRAD SGKETLNLDE YSRTFPSSAG MKHTNWTTEA TRDTTMVIIN 360 SLALVETLMD ANRWAEMFPC LIARATTTDV ISSGMGGTRN GALQLMHAEL RVLSPLVPVR 420 TLKFLRFCKQ HADGLWAVVD VSIGEGSNSN SFSGCKRLPS GCVVQDMPNG FSKVTWVEHT 480 EYDETVIHQL YRQLISSGSG FGSQRWLATL QRQCDCLAIL MSSTIPTEDP AGISPSGRRS 540 MLKLSQRMVD NFCSGVCSST LHKWDKLVVG NISEDVKVMA RKSINDPGEP PGIVLSAATS 600 VWMPVTQQRL FAFLQDECLR SEWDILSNSR PMLEMLRISK SQGPDNRVSL LCANPMNANE 660 NTMFILQETW TDVSGSLVVF APVDTSSVNL VMRGGDSAYV SLLPSGFAIL PIDQSNYACT 720 NGEDASVKSS INSGHGGACL LTVAFQILVN SLPTAKLTVE SVETVNHLIS CTIQKIKTAL 780 QVS*

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MPGGAITDPS FLPYPIPSSM PSSSEFSSSL RKMDGYGEVC LLGDGFDPTG IVRIREDEYD  60
SRSGSDNIDG AVSGDDHDAN DEQPPKRKKY HRHTPHQIQE LEIFFKECPH PDDKQRNELS  120
RRLGLETKQV KFWFQNRRTQ MKTQIERHEN AILKQENDKL RAENSVMKDA ISNPTCSTCG  180
GPSIPVHLSF EEHQLRIENA RLREELHRLY AVTNKFLGWP VVPFANHGSS PSSDSCLELS  240
VGRNGPGNLS TVSDSMGLNL GNELFSAGSV MPISKPDIGM LTNDIPLERT IYVDLALAAM  300
NELVKMAQMD GPLWIRSRAD SGKETLNLDE YSRTFPSSAG MKHTNWTTEA TRDTTMVIIN  360
SLALVETLMD ANRWAEMFPC LIARATTTDV ISSGMGGTRN GALQLMHAEL RVLSPLVPVR  420
TLKFLRFCKQ HADGLWAVVD VSIGEGSNSN SFSGCKRLPS GCVVQDMPNG FSKVTWVEHT  480
EYDETVIHQL YRQLISSGSG FGSQRWLATL QRQCDCLAIL MSSTIPTEDP AGISPSGRRS  540
MLKLSQRMVD NFCSGVCSST LHKWDKLVVG NISEDVKVMA RKSINDPGEP PGIVLSAATS  600
VWMPVTQQRL FAFLQDECLR SEWDILSNSR PMLEMLRISK SQGPDNRVSL LCANPMNANE  660
NTMFILQETW TDVSGSLVVF APVDTSSVNL VMRGGDSAYV SLLPSGFAIL PIDQSNYACT  720
NGEDASVKSS INSGHGGACL LTVAFQILVN SLPTAKLTVE SVETVNHLIS CTIQKIKTAL  780
QVS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140784.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A0A0L5U5	0.0	A0A0A0L5U5_CUCSA; Uncharacterized protein
STRING	XP_004157198.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.250870.1
Entrez Gene	101218216

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]