PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.249390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 216aa MW: 24974.6 Da PI: 9.1799 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.4 | 6e-19 | 2 | 129 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 G+ F Ptdeel+++yL +kv g ++ +++ vdiy+ eP ++ ++ + ++++fF++ +kk+++ rk + ++W+ k ++v+s+++ Cucsa.249390.1 2 GYTFCPTDEELLCYYLYHKVVGGFVPP-IMLSVVDIYTKEPPQIWqQCGGVDGQDVHFFTCLKKKKSRIVRKVG-PNGATWSGESKATKVFSHNN 94 99*********************9888.789999**********734555588899*****9998765444333.34678*************** PP NAM 98 elvglkktLvfy....kgrapkgektdWvmheyrl 128 +lvg k + + k++ ++ ++ +W+m ey+l Cucsa.249390.1 95 TLVGDFKRFHYEnpkmKKDGHHNNNYSWIMYEYTL 129 **********99776555666677999******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.539 | 1 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-13 | 2 | 129 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-22 | 2 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGYTFCPTDE ELLCYYLYHK VVGGFVPPIM LSVVDIYTKE PPQIWQQCGG VDGQDVHFFT 60 CLKKKKSRIV RKVGPNGATW SGESKATKVF SHNNTLVGDF KRFHYENPKM KKDGHHNNNY 120 SWIMYEYTLH PNLVPEGVVH DSFVLCMLRK KILKQDKRAF SAIKQTSSCL DWPNTTKATT 180 TQLEVHIDDL NTKRRRVEEQ ICIDRNHPNF FQRGT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 196 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011660358.1 | 5e-72 | PREDICTED: uncharacterized protein LOC105436381 | ||||
TrEMBL | A0A0A0LWA5 | 1e-140 | A0A0A0LWA5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170453.1 | 1e-144 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 4e-12 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.249390.1 |