PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.247040.1

Common Name

Csa_6G327430, LOC101205991

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 327aa MW: 36456.6 Da PI: 6.6313

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.247040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.6	6.3e-34	162	220	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v++tYeg+H+h+ Cucsa.247040.1 162 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHQ 220 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.5E-36	147	222	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-30	154	222	IPR003657	WRKY domain
PROSITE profile	PS50811	32.937	157	222	IPR003657	WRKY domain
SMART	SM00774	9.2E-41	162	221	IPR003657	WRKY domain
Pfam	PF03106	1.5E-27	163	220	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEEEKIKEEV LRNNRDQNSM GNPGLLFSDA IIPNNHTTNL FDFPLIDTID SSFKPSTFLD 60 LLATQDYTPS LFDLFSPPPP PPQPPLPLPS SAVAESSEVL NTPTTPNSSS VSCSSTERAF 120 DNDDVDRDKS PFNKQLKAKK KNQKKGREPR FAFMTKSEVD HLDDGYRWRK YGQKAVKNSP 180 YPRSYYRCTT AGCGVKKRVE RSSDDPSIVV TTYEGQHTHQ SPIMPRGALS STAFTPSPQQ 240 QPPLVFSQPQ QLYRNQFTYA PAPPADVVTC GGGFGHVFHS FGEERRLIDG RTTTTTSTTT 300 TDSFQDHGLL QDMIVPFPEE KEKKVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-30	152	222	7	77	Probable WRKY transcription factor 4
2lex_A	1e-30	152	222	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN683518	0.0	LN683518.1 Cucumis melo genomic scaffold, unassembled_sequence31001.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657294.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	O22900	1e-50	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A0A0KD61	0.0	A0A0A0KD61_CUCSA; Uncharacterized protein
STRING	XP_008467077.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	3e-47	WRKY DNA-binding protein 48

Link Out ? help Back to Top
Phytozome	Cucsa.247040.1
Entrez Gene	101205991

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]