PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.244650.1 | ||||||||
Common Name | Csa_3G199590, LOC101204047 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 114aa MW: 13284.9 Da PI: 10.3771 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.4e-17 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll +v+ G ++W++I++ + gR++k+c++rw++ Cucsa.244650.1 12 KGPWSPEEDLLLRMLVQDQGARNWSLISQSIH-GRSGKSCRLRWFNQ 57 79******************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 59.7 | 6.2e-19 | 64 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eEd +vda++ +G++ W+tIar ++ gRt++ +k++w++ Cucsa.244650.1 64 RRPFTPEEDAFIVDAHRIYGNK-WATIARLLN-GRTDNAIKNHWNST 108 679*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.726 | 7 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.45E-31 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-17 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.33E-12 | 14 | 56 | No hit | No description |
PROSITE profile | PS51294 | 24.481 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 8.0E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 64 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.36E-12 | 66 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MPSVHPDIDR VKGPWSPEED LLLRMLVQDQ GARNWSLISQ SIHGRSGKSC RLRWFNQLCP 60 GLDRRPFTPE EDAFIVDAHR IYGNKWATIA RLLNGRTDNA IKNHWNSTLK RKYX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-37 | 9 | 112 | 4 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681851 | 1e-125 | LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038. | |||
GenBank | LN713260 | 1e-125 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140809.1 | 3e-80 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 8e-50 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A0A0LA79 | 8e-79 | A0A0A0LA79_CUCSA; Uncharacterized protein | ||||
STRING | XP_004140809.1 | 1e-79 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 2e-53 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.244650.1 |
Entrez Gene | 101204047 |
Publications ? help Back to Top | |||
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