PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.244250.1

Common Name

Csa_3G207940, LOC101217033

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Protein Properties

Length: 466aa MW: 53127.6 Da PI: 6.8021

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.244250.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.9	3.3e-17	81	170	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +kv++ps+v+ +l lpk f++ h ++k +++ ++lede+g+ +e k+ +k++ l++GW++F a++L +gD++vF+l+ ++f +v + Cucsa.244250.1 81 IKVMLPSHVTGGFWLGLPKGFCDIH-LPK-QDTAMVLEDENGKLYETKYLSDKTG----LSAGWRGFSIAHKLLQGDVIVFHLVMPNKF--MVYI 167 699*****************655.554.6789***********656665....*********************9865666..9999 PP E-S CS B3 97 frk 99 +r+ Cucsa.244250.1 168 VRS 170 886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-19	72	171	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-22	73	171	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.71E-25	78	169	No hit	No description
SMART	SM01019	4.0E-20	80	171	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.717	80	171	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.8E-15	81	170	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MNQWRPGKKE KLFRRKTWVS STQPTTSYDQ DAVHSFSQPR RVKPKRTTVD SLYHDLEAQS 60 VVMARAKEVQ AKLSPRNPSL IKVMLPSHVT GGFWLGLPKG FCDIHLPKQD TAMVLEDENG 120 KLYETKYLSD KTGLSAGWRG FSIAHKLLQG DVIVFHLVMP NKFMVYIVRS NSAAKVDGAL 180 GLKYEASYKQ TPIYSKENIP HIKEEQITVE DENAEETNVV PVKEETEEDH NPVSHPMDIH 240 EEREQTNSHK LLDTEMMPVL EESENERRSS DSNSMNGIHL SDSRLSFDKV NSLDDFIISV 300 NGLIIDSGFS NHIRAKYYEL CCSQKSFLHD HILEGLNYKL VSGIISETIN IADAIKASKV 360 TISQEHLVTW DKTLTAFEGL GMNVGFLRVR INQLLTLSQK PEKKREAEMM RDSKQEELHI 420 LLTKIMEGRT TLRQLEAKIC SLETDIKHMD KLFKEVASAP WYLER*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MNQWRPGKKE KLFRRKTWVS STQPTTSYDQ DAVHSFSQPR RVKPKRTTVD SLYHDLEAQS  60
VVMARAKEVQ AKLSPRNPSL IKVMLPSHVT GGFWLGLPKG FCDIHLPKQD TAMVLEDENG  120
KLYETKYLSD KTGLSAGWRG FSIAHKLLQG DVIVFHLVMP NKFMVYIVRS NSAAKVDGAL  180
GLKYEASYKQ TPIYSKENIP HIKEEQITVE DENAEETNVV PVKEETEEDH NPVSHPMDIH  240
EEREQTNSHK LLDTEMMPVL EESENERRSS DSNSMNGIHL SDSRLSFDKV NSLDDFIISV  300
NGLIIDSGFS NHIRAKYYEL CCSQKSFLHD HILEGLNYKL VSGIISETIN IADAIKASKV  360
TISQEHLVTW DKTLTAFEGL GMNVGFLRVR INQLLTLSQK PEKKREAEMM RDSKQEELHI  420
LLTKIMEGRT TLRQLEAKIC SLETDIKHMD KLFKEVASAP WYLER*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681851	0.0	LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651246.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A0A0L6H6	0.0	A0A0A0L6H6_CUCSA; Uncharacterized protein
STRING	XP_008456112.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1007	33	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-37	B3 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.244250.1
Entrez Gene	101217033

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]