PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.242740.2 | ||||||||
Common Name | Csa_3G808380, LOC101222865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 227aa MW: 23457.6 Da PI: 9.1716 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.9 | 1.3e-06 | 32 | 54 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + C+ + Ck+Gd+C+FaH Cucsa.242740.2 32 SRMCNKYNSAEGCKFGDKCHFAH 54 567888888889*********** PP | |||||||
2 | zf-CCCH | 37.1 | 5.4e-12 | 193 | 217 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++fa+ G C +G+rC+FaHg Cucsa.242740.2 193 FKTKLCDNFAK-GSCTFGERCHFAHG 217 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-12 | 28 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.436 | 29 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-7 | 29 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.64 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.36E-16 | 88 | 169 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 7.6E-18 | 97 | 166 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.9E-12 | 97 | 167 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.739 | 98 | 162 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 4.4E-12 | 100 | 164 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 8.98E-16 | 100 | 163 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-16 | 190 | 223 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-7 | 192 | 218 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.164 | 192 | 219 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 192 | 222 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-9 | 193 | 217 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MMNLPPAPPA PRNMGAPPPP MSNGSATQAV KSRMCNKYNS AEGCKFGDKC HFAHAEWELG 60 KPSAPSHDDP RSMGHIPNRL ASRMDAGPPG LAASFGASST AKISVDASLA GAIIGKGGIN 120 SKQICRRTGA KLSIRDHESD PNLRNIELEG SFDQIKEASA MVQELIVTVS MAGPPKSATG 180 ATGGTAGPAG NNFKTKLCDN FAKGSCTFGE RCHFAHGAAE LRKSGV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136573.1 | 1e-165 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q69XQ3 | 1e-81 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A0A0LEG5 | 1e-164 | A0A0A0LEG5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136573.1 | 1e-165 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 3e-61 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.242740.2 |
Entrez Gene | 101222865 |
Publications ? help Back to Top | |||
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