PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.242740.1
Common NameCsa_3G808380, LOC101222865
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 297aa    MW: 31042.3 Da    PI: 9.6358
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.242740.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-06102124325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      + C+ +     Ck+Gd+C+FaH
  Cucsa.242740.1 102 SRMCNKYNSAEGCKFGDKCHFAH 124
                     567888888889*********** PP
2zf-CCCH36.67.8e-12263287126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC++fa+ G C +G+rC+FaHg
  Cucsa.242740.1 263 FKTKLCDNFAK-GSCTFGERCHFAHG 287
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.63E-63461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3893462IPR000571Zinc finger, CCCH-type
SMARTSM003560.53461IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-83559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-1298131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.43699127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-799129IPR000571Zinc finger, CCCH-type
SMARTSM003560.64101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.99E-16158238IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-17167236IPR004088K Homology domain, type 1
SMARTSM003221.9E-12167237IPR004087K Homology domain
PROSITE profilePS5008414.739168232IPR004088K Homology domain, type 1
PfamPF000137.2E-12170234IPR004088K Homology domain, type 1
CDDcd001052.13E-15170233No hitNo description
Gene3DG3DSA:4.10.1000.101.4E-15260293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8262292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164262289IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7262288IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9263287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDTRKRGRAE VGLKANGGLK KNKQDMEYLS TGVASKSKPC TKFYSTTGCP FGEACHFLHY  60
VPGGYNAVAQ MMNLPPAPPA PRNMGAPPPP MSNGSATQAV KSRMCNKYNS AEGCKFGDKC  120
HFAHAEWELG KPSAPSHDDP RSMGHIPNRL ASRMDAGPPG LAASFGASST AKISVDASLA  180
GAIIGKGGIN SKQICRRTGA KLSIRDHESD PNLRNIELEG SFDQIKEASA MVQELIVTVS  240
MAGPPKSATG ATGGTAGPAG NNFKTKLCDN FAKGSCTFGE RCHFAHGAAE LRKSGV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136573.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-111C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0A0LEG50.0A0A0A0LEG5_CUCSA; Uncharacterized protein
STRINGXP_004136573.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-60C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]