PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.242570.2
Common NameCsa_3G800720, LOC101222778
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 385aa    MW: 41559.6 Da    PI: 5.9133
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.242570.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.27.9e-15234287256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k q   Lee F+++ +++ ++   LAk+l+L  rqV vWFqNrRa+ k
  Cucsa.242570.2 234 RKKLRLSKLQSAFLEESFKEHTTLNPQKL-ALAKQLNLRPRQVEVWFQNRRARTK 287
                     6788899*****************98765.7**********************98 PP

2HD-ZIP_I/II115.62.9e-37234323192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlsk q+++LEesF+e+++L+p +K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ke +eLr +lk
  Cucsa.242570.2 234 RKKLRLSKLQSAFLEESFKEHTTLNP-QKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELR-ALK 323
                     69***********************9.69**********************************************************9.555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-15219290IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-14220287IPR009057Homeodomain-like
PROSITE profilePS5007113.556230289IPR001356Homeobox domain
SMARTSM003895.0E-12232293IPR001356Homeobox domain
CDDcd000861.30E-12234290No hitNo description
PfamPF000462.6E-12234287IPR001356Homeobox domain
PROSITE patternPS000270264287IPR017970Homeobox, conserved site
PfamPF021831.0E-10289323IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.2E-25289332IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVELGLSLGD HPSSNSNSNN KKKPFSNFLS KPISSSSNSS SSLMALGFCV GLIGRHSASA  60
SASASVQDDE EDEEQDDEDE DDDRKTVVLA GSTSGLDPPV QLDLLPLAPV PRSSSSSSPL  120
LPFPWLSHHL MGEVGGSSEG GERVETVDVK RVVVEEREDR VAAVAVAALS SPNSTVSCFE  180
MEFGGGGGGG GGIRRKRSWD HMEMETERGG GGGGCSRIMS DDEDNNASAS AAARKKLRLS  240
KLQSAFLEES FKEHTTLNPQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLRR  300
CCETLTEENR RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVATTT TTTPAPTTPA  360
PSSALCLANK PKILPFPHLH QAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281289RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136729.20.0PREDICTED: homeobox-leucine zipper protein HOX11
TrEMBLA0A0A0LEE10.0A0A0A0LEE1_CUCSA; Uncharacterized protein
STRINGXP_004136729.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-66homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]