PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.242570.1 | ||||||||
Common Name | Csa_3G800720, LOC101222778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 386aa MW: 41687.7 Da PI: 6.1249 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.8 | 6.9e-17 | 234 | 288 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k q Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Cucsa.242570.1 234 RKKLRLSKLQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 288 6788899**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.6e-39 | 234 | 324 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ke +eLr +lk Cucsa.242570.1 234 RKKLRLSKLQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELR-ALK 324 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-18 | 219 | 291 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-16 | 220 | 288 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 230 | 290 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-14 | 232 | 294 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-14 | 234 | 288 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.88E-14 | 234 | 291 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 265 | 288 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.1E-10 | 290 | 324 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.2E-25 | 290 | 333 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MVELGLSLGD HPSSNSNSNN KKKPFSNFLS KPISSSSNSS SSLMALGFCV GLIGRHSASA 60 SASASVQDDE EDEEQDDEDE DDDRKTVVLA GSTSGLDPPV QLDLLPLAPV PRSSSSSSPL 120 LPFPWLSHHL MGEVGGSSEG GERVETVDVK RVVVEEREDR VAAVAVAALS SPNSTVSCFE 180 MEFGGGGGGG GGIRRKRSWD HMEMETERGG GGGGCSRIMS DDEDNNASAS AAARKKLRLS 240 KLQSAFLEES FKEHTTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLR 300 RCCETLTEEN RRLQKELQEL RALKTSQPFY MQLPATTLTM CPSCERVATT TTTTPAPTTP 360 APSSALCLAN KPKILPFPHL HQAAS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 282 | 290 | RRARTKLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136729.2 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A0A0LEE1 | 0.0 | A0A0A0LEE1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136729.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-55 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.242570.1 |
Entrez Gene | 101222778 |
Publications ? help Back to Top | |||
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