PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.241980.1
Common NameCsa_3G782710, LOC101219461
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YA
Protein Properties Length: 325aa    MW: 35464.4 Da    PI: 9.7272
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.241980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.34e-31157213158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++I++RRq Rak+  e+kl +++rkpy+heSRh hA+rRpRgsgGrF
  Cucsa.241980.1 157 DGPIYVNAKQYHGIIRRRQIRAKAMMENKL-ARTRKPYMHESRHLHAMRRPRGSGGRF 213
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-34155216IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.928156216IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-27159213IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.4E-23159181IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.4E-23190213IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAPQTGCLKE HERIIPNSLG QLSPTPARLW SALGQGSQSI FGDFGQVKAS SIQLGSNGKE  60
FNGTKQVVAH GLDKLNTAPF SIYPGDYKIS MDAQKPSPVF SLQSPLTEYH NRFELGFGQP  120
LICANYPYMD QHYGILSAYG PQIPGRIMLP MSLTSDDGPI YVNAKQYHGI IRRRQIRAKA  180
MMENKLARTR KPYMHESRHL HAMRRPRGSG GRFLNTKNLK NGKSSMEPKK IDEVNLSDST  240
GSQCSVVLQS ESGTLNSPNE AKGRGFSLSS SEVSSLFSRG LQRFQINHLG PSIPSLAEII  300
DGGGHGMVLP KWVAAADNCC DLCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-17157218263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136716.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBLA0A0A0LE750.0A0A0A0LE75_CUCSA; Uncharacterized protein
STRINGXP_004136716.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.28e-58nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]