PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.241440.1 | ||||||||
Common Name | Csa_3G778200, LOC101214938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 28156.4 Da PI: 8.9544 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 104.8 | 4.5e-33 | 2 | 118 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k ltpsdv+k++rlv+pk++ae++ g + ++ l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L++g Cucsa.241440.1 2 FEKPLTPSDVGKLNRLVIPKQYAEKYfplspsaavataaaaaaaGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAG 96 99*****************************999999999999866667999******************************************* PP -EEEEEE-SSSEE..EEEEE-S CS B3 78 DfvvFkldgrsefelvvkvfrk 99 D+vvF++++r++ +l++++ ++ Cucsa.241440.1 97 DVVVFERHRRDGDRLFIGWKKR 118 ******9999999999999776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.70E-29 | 1 | 108 | No hit | No description |
SuperFamily | SSF101936 | 1.31E-30 | 1 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-41 | 1 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.3E-30 | 2 | 118 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-27 | 2 | 119 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.381 | 2 | 119 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MFEKPLTPSD VGKLNRLVIP KQYAEKYFPL SPSAAVATAA AAAAAGDSAD KGLLLSFEDE 60 SGKIWRFRYS YWNSSQSYVL TKGWSRFVKE KRLDAGDVVV FERHRRDGDR LFIGWKKRSA 120 PSPTDSAVAT GSGGVGGGGG WTRMFCSANS YPNSHRHLPS PPYQSSSDTP HAESSVQSQT 180 VSIGNSKILR LFGVDLECQT DMSEPEPPSL LNIGSSLTLS GRDPTRHTFY PHYSSPLPHH 240 MDFTFSQDVN QTKYQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 7e-47 | 1 | 131 | 13 | 130 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136699.1 | 0.0 | PREDICTED: B3 domain-containing protein At2g36080-like | ||||
Swissprot | Q8GYJ2 | 1e-65 | Y2608_ARATH; B3 domain-containing protein At2g36080 | ||||
TrEMBL | A0A0A0LBH2 | 0.0 | A0A0A0LBH2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136699.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5739 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.1 | 2e-67 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.241440.1 |
Entrez Gene | 101214938 |
Publications ? help Back to Top | |||
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