PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.240590.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 102aa    MW: 11542.1 Da    PI: 6.9708
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.240590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.6e-081058248
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     ++WT+   + +  a +++  +   +W  +a+ +g  +t++++k ++q +l
   Cucsa.240590.1 10 NAWTKMQNKTFEMALAEYDQDtpeRWVNVAKAVG-EKTEEEVKRHYQLLL 58
                     68******************9*************.9***********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.156458IPR017877Myb-like domain
SMARTSM007171.4E-7860IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-111066IPR009057Homeodomain-like
PfamPF002493.2E-61057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-51164IPR009057Homeodomain-like
CDDcd001671.42E-61158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MASMSSHGSN AWTKMQNKTF EMALAEYDQD TPERWVNVAK AVGEKTEEEV KRHYQLLLHD  60
VKHIESGNVP FPYPKTSSND DLPRKRGVLF LLSPFSFSIS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-26180179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818001e-117LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132551e-117LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447294.12e-59PREDICTED: protein RADIALIS-like 2
SwissprotF4JVB82e-27RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S3BHZ45e-58A0A1S3BHZ4_CUCME; protein RADIALIS-like 2
STRINGXP_004149425.12e-59(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3142022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-29RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]