PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.240160.1
Common NameCsa_7G252650
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 473aa    MW: 51903.6 Da    PI: 8.3692
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.240160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.7e-11163187226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+Gd+CkF H+
  Cucsa.240160.1 163 GEKDCAHYMLTRTCKFGDSCKFDHP 187
                     7889********************8 PP
2zf-CCCH34.34e-11217240427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C++f++t  Ck+G+rCkF+H++
  Cucsa.240160.1 217 PDCPYFLKTQRCKFGSRCKFNHPK 240
                     78********************96 PP
3zf-CCCH34.53.4e-11262286327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++lC f+ +tG Ck+G +CkF+H++
  Cucsa.240160.1 262 EPLCAFYVKTGNCKFGINCKFHHPK 286
                     79*********************96 PP
4zf-CCCH375.5e-12338363126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG +C+++H+
  Cucsa.240160.1 338 PGEVDCPFYLKTGSCKYGTTCRYNHP 363
                     57899********************9 PP
5zf-CCCH41.13e-13425448326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C+f+++tG Ck+G+rCkF+H+
  Cucsa.240160.1 425 QIECDFYMKTGDCKFGERCKFHHP 448
                     568********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.507161189IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011161188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5163188IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8163187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4167186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587213241IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5213240IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8217240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5218242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4219239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441259287IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6259286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6262286IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8262286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5264285IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234337365IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9339363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5341364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4343362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15422450IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6422449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6425450IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10426448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5428448IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MANQLHSYNS AYGAVSASAT ATAVPSLPTT YSTSRSLSDI VSGRYLLPDS LSSGISIKHS  60
VTDRGTSMYS TQKEGPMLSS ADIVPRTSHL VSQFSWPGSH VAAALDSVVS GIKRSSDVLY  120
DQTVLGSYNT LGQSEAWYTS NSLAKRPRFE STSNLPVYPQ RPGEKDCAHY MLTRTCKFGD  180
SCKFDHPIWV PEGGIPDWKE VPQIANSEDL PERLGDPDCP YFLKTQRCKF GSRCKFNHPK  240
DRSDSVGAEK SDASSLPERP SEPLCAFYVK TGNCKFGINC KFHHPKDIQI LSGEEYGNSE  300
QTLMVKTEER AGDFKLVKPP ISLSPAIMHN SKGLPIRPGE VDCPFYLKTG SCKYGTTCRY  360
NHPDRNGTAI NPSTPAMVHP AMVSTANMNT GFVNPSNAIY QAVDPRLIQP LLGSGSSIYP  420
QRPGQIECDF YMKTGDCKFG ERCKFHHPID RSAPKQGALH NVKLTLAGLP RRE
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818001e-146LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132551e-146LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148293.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-163C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0A0K4690.0A0A0A0K469_CUCSA; Uncharacterized protein
STRINGXP_004148293.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-165floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]