PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.239660.1 | ||||||||
Common Name | Csa_7G237840, LOC101213100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 17488.1 Da PI: 7.9916 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.9 | 4.8e-45 | 23 | 123 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+apyfpa++p+kf vhk+FGasnv+kll++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i+ lqqq++ l+++la Cucsa.239660.1 23 PCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGAISCLQQQVDALQQQLA 117 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++l Cucsa.239660.1 118 ITQAQL 123 *99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.889 | 22 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-44 | 23 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MASSEMMMMM NGSCKKGNGA AAPCAACKLL RRRCAHDCVF APYFPADHPH KFSSVHKVFG 60 ASNVSKLLQE LPEQQRSDAV SSMVYEANAR IRDPVYGCVG AISCLQQQVD ALQQQLAITQ 120 AQLVQMKMGQ FTTTSQSSSS TDDLLPPPPN INVAASSSLW SC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-50 | 19 | 131 | 7 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-50 | 19 | 131 | 7 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 1e-127 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 1e-127 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139827.1 | 1e-118 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q8LBW3 | 5e-55 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0A0K5P4 | 1e-117 | A0A0A0K5P4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004139827.1 | 1e-118 | (Cucumis sativus) | ||||
STRING | XP_004169335.1 | 1e-118 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-50 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.239660.1 |
Entrez Gene | 101213100 |
Publications ? help Back to Top | |||
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