PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.238090.1 | ||||||||
Common Name | Csa_5G644520, LOC105435716 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 396aa MW: 44721 Da PI: 8.3921 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 147.8 | 7.6e-46 | 120 | 271 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec......eaesss 79 +kkdrhski+T++g+RdRRvRls+++ ++fFdLqd+LG+dk+skt++WLl+++ +aikelt+ ssss+s++ e+ + Cucsa.238090.1 120 VKKDRHSKIYTAQGLRDRRVRLSIDISRKFFDLQDMLGYDKASKTLDWLLTKSRKAIKELTKKtqyhnnnnniitSSSSSSKFhfdhdfEECEVI 214 79*************************************************************66666666655422222222233333444444 PP TCP 80 ssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135 s+++ ++++++ +s++ +k+ + lakesrakarararert+ekm ++++ Cucsa.238090.1 215 SNDDDDEEAEKIIMLGkSSSNCKKNLGFHDVLAKESRAKARARARERTKEKMIMNQQ 271 4444444444444444366666666677788899*******************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.3E-44 | 120 | 268 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.65 | 121 | 179 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.537 | 248 | 265 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MFSSTNNLHL FPLQQYFPSS SSSSPSYHHH LVAPPPSPPP HHHHSEPVYI GPLQDPVLSG 60 VVAPIFLQVQ EEDRDQARMK NEQQEVAVLM SQNGNNNNNN NGQCFSSSTT LNNFTKKGSV 120 KKDRHSKIYT AQGLRDRRVR LSIDISRKFF DLQDMLGYDK ASKTLDWLLT KSRKAIKELT 180 KKTQYHNNNN NIITSSSSSS KFHFDHDFEE CEVISNDDDD EEAEKIIMLG KSSSNCKKNL 240 GFHDVLAKES RAKARARARE RTKEKMIMNQ QFRSPPPPPP QPSMPTPVVQ KAAGPDQENN 300 NIIGIMWKPS PMVTSSSSYQ KNLVISKGES CNYNNYCNNF YFPASNLTPN WDINIDSTFA 360 RPQSGFCSIA NMDSLPEFQV CAKPWDSCNN NQHLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-14 | 126 | 179 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-14 | 126 | 179 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC009303 | 0.0 | LC009303.1 Cucumis melo CmTCP1 gene for TCP transcription factor, complete cds, cultivar: Fuyukei 1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656282.1 | 0.0 | PREDICTED: transcription factor DICHOTOMA-like | ||||
TrEMBL | A0A0A0KSL1 | 0.0 | A0A0A0KSL1_CUCSA; Uncharacterized protein | ||||
STRING | XP_008459708.1 | 1e-177 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 5e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.238090.1 |
Entrez Gene | 105435716 |
Publications ? help Back to Top | |||
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