PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.236600.1 | ||||||||
Common Name | Csa_1G713680, LOC101202930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 18576.1 Da PI: 8.2231 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.1 | 2e-45 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++Cv+apyfpa+qp+kfanvhk+FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lq+q++ l+++la Cucsa.236600.1 15 PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLA 109 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e Cucsa.236600.1 110 LAQAE 114 99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.455 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-45 | 15 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MKTENGRKQG GGAAPCAACK LLRRRCGEEC VFAPYFPADQ PHKFANVHKV FGASNVNKML 60 QELPIHQRGD AVSSLVYEAN ARVRDPVYGC VGAISSLQHQ IDALQTQLAL AQAEVVHLRV 120 RQTASFSNYG LSPTSPSNSG SPSSRLMGSQ SRTMFEMDMV VDQAMEESMW * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-49 | 11 | 116 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-49 | 11 | 116 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681931 | 1e-153 | LN681931.1 Cucumis melo genomic scaffold, anchoredscaffold00049. | |||
GenBank | LN713266 | 1e-153 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145462.1 | 1e-126 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 1e-71 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0A0LYG0 | 1e-125 | A0A0A0LYG0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004145462.1 | 1e-125 | (Cucumis sativus) | ||||
STRING | XP_004164216.1 | 1e-125 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 8e-69 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.236600.1 |
Entrez Gene | 101202930 |
Publications ? help Back to Top | |||
---|---|---|---|
|