PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.232760.1 | ||||||||
Common Name | Csa_2G359980, LOC101205473 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 25726.4 Da PI: 10.2223 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.8 | 6.2e-16 | 127 | 217 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+ ++ ++++ + +tl de+g ++ + rk++ l++GWk+F+ a++L +gD v+F++++ ++++v+ Cucsa.232760.1 127 FIKSMLQSHVSGGFWLGLPSHFC-KNRLPNR-DGVMTLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHKLADGDAVIFQFIK--PTTCKVH 213 89*********************.7877754.459***************656665....***********************886..6778999 PP EE-S CS B3 96 vfrk 99 ++r+ Cucsa.232760.1 214 ILRT 217 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.44E-24 | 121 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-19 | 121 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.60E-25 | 125 | 216 | No hit | No description |
SMART | SM01019 | 2.2E-21 | 127 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.885 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 127 | 217 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MGIANLSYEE CRRKRLEENK KRMEALNLPM LSQALIDSSP SKSSPSKLTK PRVTQKELVV 60 VRRSSRVAKQ TAPVYAEVII NRVVIPRRIS KARDLSNRVY ASDEARKEAF ERAEQLQSGL 120 EPNYPSFIKS MLQSHVSGGF WLGLPSHFCK NRLPNRDGVM TLIDEDGDEY PTIYLARKTG 180 LSGGWKGFAV AHKLADGDAV IFQFIKPTTC KVHILRTNSS REDSDSNSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-106 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-106 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152735.1 | 1e-171 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 7e-75 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A0A0LNH0 | 1e-169 | A0A0A0LNH0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004160007.1 | 1e-170 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-71 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.232760.1 |
Entrez Gene | 101205473 |
Publications ? help Back to Top | |||
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