PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.232750.1 | ||||||||
Common Name | Csa_2G359985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 194aa MW: 21733.9 Da PI: 9.4175 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.4 | 3e-14 | 111 | 189 | 2 | 86 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +k +++s+v+ +l lp +f+++h +k+ +tl de+g ++ + + rk++ +++GWk+F a++L +gD vvF++++ Cucsa.232750.1 111 IKSMVRSHVSGCFWLGLPSHFCKTHL-PKND-GVMTLIDEDGDEYPIIYLARKTG----FSGGWKGFSIAHKLSDGDAVVFQHIK 189 6999******************9993.3333.37***************555555....99*********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-20 | 104 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-16 | 104 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.93E-23 | 108 | 191 | No hit | No description |
PROSITE profile | PS50863 | 10.546 | 110 | 194 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-15 | 110 | 194 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-12 | 111 | 189 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGISNLSYEE CRQKRVEENK KRMEALNLPL LSQALLDSSP SKSSPKQLVV VRRSSRVAKQ 60 PTPVYAEVSH QISRARDFSA QFYASDEARK KAFERALELQ SGLEPNYPSC IKSMVRSHVS 120 GCFWLGLPSH FCKTHLPKND GVMTLIDEDG DEYPIIYLAR KTGFSGGWKG FSIAHKLSDG 180 DAVVFQHIKP TACK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 9e-98 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 9e-98 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022144315.1 | 1e-111 | B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 5e-60 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A0A0LKX3 | 1e-130 | A0A0A0LKX3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004160008.1 | 1e-131 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-52 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.232750.1 |
Publications ? help Back to Top | |||
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