PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.228750.1 | ||||||||
Common Name | Csa_4G056530, LOC101212987 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | BES1 | ||||||||
Protein Properties | Length: 676aa MW: 76065.8 Da PI: 6.5608 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 156.3 | 2.2e-48 | 60 | 199 | 1 | 134 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 gg+ +++++kE+E++k+RER+RRai+++i+aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr+++ p ++++ ++ +s es+++ Cucsa.228750.1 60 GGKAKREREKEKERTKLRERHRRAITSRILAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQSTPPS--QSQGAAFPVRSGESPIS 152 57899*****************************************************************999888..66677788888888888 PP DUF822 96 .sslkssalaspvesysaspksssfpspssldsislasa.......a 134 s k +++++ ++ + ++++ ++++sp+slds+ +++ + Cucsa.228750.1 153 sGSFKGCSIKAALDCQPSVLRIDESLSPASLDSVVITERdaknekyT 199 7789*******************************998765543333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 7.2E-49 | 61 | 206 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 5.7E-160 | 227 | 669 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.0E-170 | 230 | 661 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 4.0E-81 | 254 | 625 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-53 | 267 | 281 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-53 | 288 | 306 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-53 | 310 | 331 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-53 | 403 | 425 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-53 | 476 | 495 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-53 | 510 | 526 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-53 | 527 | 538 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-53 | 545 | 568 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-53 | 583 | 605 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MSGSLNDDTF HQDLQSQANH ASDYLSHQLQ PPPPPRRPRG FAATAAAAMG PTTTTAATTG 60 GKAKREREKE KERTKLRERH RRAITSRILA GLRQYGNFPL PARADMNDVL AALAREAGWV 120 VEADGTTYRQ STPPSQSQGA AFPVRSGESP ISSGSFKGCS IKAALDCQPS VLRIDESLSP 180 ASLDSVVITE RDAKNEKYTA LSPLNSAHCL EDQLIQDIRC RENESQFRGT PYVPVYVMLA 240 TGFISNFCQL IDPDGVRQEL SHLQSLNVDG VIVDCWWGIV EAWNPQKYVW SGYRDLFNII 300 REFKLKVQVV MAFHASGGTE SGDAFIKLPQ WVLEIGKENP DIFFTDREGR RNKDCLSWGI 360 DKERVLRGRT GIEVYFDFMR SFHTEFNDLF AEGLVSAIEV GLGASGELKY PSFSERMGWR 420 YPGIGEFQCY DKYLQQSLRK AAGMRGHSFW ARGPDNAGQY NSRPHESGFF CERGDYDSYY 480 GRFFLQWYAQ TLIYHVDNVL SLASLVFEET KFIVKIPAVY WWYKTSSHAA ELTSGFYNPS 540 NQDGYSPVFD VLKKHSVIVK LVCCGMPVAG QEVDDALADP ESLSWQILNS AWDRGLTVAG 600 ENSLSCYDRD GYMRIIDMAK PRSDPDRHRF SFFAYRQPSA LIQGAVCFPE LDYFIKCMHG 660 KYLICSSFTV MDYCI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-123 | 232 | 675 | 11 | 458 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 0.0 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011653241.1 | 0.0 | PREDICTED: beta-amylase 8 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A0A0KYL2 | 0.0 | A0A0A0KYL2_CUCSA; Beta-amylase | ||||
STRING | XP_008451866.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11902 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.2 | 0.0 | beta-amylase 2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.228750.1 |
Entrez Gene | 101212987 |
Publications ? help Back to Top | |||
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