PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.228750.1
Common NameCsa_4G056530, LOC101212987
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family BES1
Protein Properties Length: 676aa    MW: 76065.8 Da    PI: 6.5608
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.228750.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822156.32.2e-48601991134
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                     gg+ +++++kE+E++k+RER+RRai+++i+aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr+++ p   ++++ ++  +s es+++
  Cucsa.228750.1  60 GGKAKREREKEKERTKLRERHRRAITSRILAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQSTPPS--QSQGAAFPVRSGESPIS 152
                     57899*****************************************************************999888..66677788888888888 PP

          DUF822  96 .sslkssalaspvesysaspksssfpspssldsislasa.......a 134
                       s k +++++ ++ + ++++ ++++sp+slds+ +++        +
  Cucsa.228750.1 153 sGSFKGCSIKAALDCQPSVLRIDESLSPASLDSVVITERdaknekyT 199
                     7789*******************************998765543333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.2E-4961206IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.7E-160227669IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.0E-170230661IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.0E-81254625IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-53267281IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-53288306IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-53310331IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-53403425IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-53476495IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-53510526IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-53527538IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-53545568IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-53583605IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MSGSLNDDTF HQDLQSQANH ASDYLSHQLQ PPPPPRRPRG FAATAAAAMG PTTTTAATTG  60
GKAKREREKE KERTKLRERH RRAITSRILA GLRQYGNFPL PARADMNDVL AALAREAGWV  120
VEADGTTYRQ STPPSQSQGA AFPVRSGESP ISSGSFKGCS IKAALDCQPS VLRIDESLSP  180
ASLDSVVITE RDAKNEKYTA LSPLNSAHCL EDQLIQDIRC RENESQFRGT PYVPVYVMLA  240
TGFISNFCQL IDPDGVRQEL SHLQSLNVDG VIVDCWWGIV EAWNPQKYVW SGYRDLFNII  300
REFKLKVQVV MAFHASGGTE SGDAFIKLPQ WVLEIGKENP DIFFTDREGR RNKDCLSWGI  360
DKERVLRGRT GIEVYFDFMR SFHTEFNDLF AEGLVSAIEV GLGASGELKY PSFSERMGWR  420
YPGIGEFQCY DKYLQQSLRK AAGMRGHSFW ARGPDNAGQY NSRPHESGFF CERGDYDSYY  480
GRFFLQWYAQ TLIYHVDNVL SLASLVFEET KFIVKIPAVY WWYKTSSHAA ELTSGFYNPS  540
NQDGYSPVFD VLKKHSVIVK LVCCGMPVAG QEVDDALADP ESLSWQILNS AWDRGLTVAG  600
ENSLSCYDRD GYMRIIDMAK PRSDPDRHRF SFFAYRQPSA LIQGAVCFPE LDYFIKCMHG  660
KYLICSSFTV MDYCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12323267511458Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653241.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0A0KYL20.0A0A0A0KYL2_CUCSA; Beta-amylase
STRINGXP_008451866.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]