PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.219930.1
Common NameCsa_7G073740, LOC101206354
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 323aa    MW: 36466.4 Da    PI: 9.7393
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.219930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-17128217198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+++h   ++e+  ltl de+ ++++ k+  +k++    l++GW++F  +++L +gD +vF+l++ +ef  +v 
  Cucsa.219930.1 128 FVKPMLQSHVSGGFWLGLPVQFCKTHL--PREDEILTLVDEDENEFQTKYLADKTG----LSGGWRGFSIDHQLVDGDALVFQLTNPTEF--KVY 214
                     89************************4..345568***************666666....***********************9775666..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  Cucsa.219930.1 215 IIR 217
                     887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-21119217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-24121217IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-26126217No hitNo description
SMARTSM010192.7E-20128219IPR003340B3 DNA binding domain
PfamPF023623.3E-15128217IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857128219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVESNLTYEE CRRQRLEENK KRMEELNLNK LADAFKSSSP KSSPTKQLKR PRQTLDASSF  60
SVRRSSRFSD KPPMNYKEVP IEPLPGIRRS YQRRDLLNRI YASDEERQYA IDRARDLQSS  120
LESEYPSFVK PMLQSHVSGG FWLGLPVQFC KTHLPREDEI LTLVDEDENE FQTKYLADKT  180
GLSGGWRGFS IDHQLVDGDA LVFQLTNPTE FKVYIIRTYN SADKEDTKEG SDATQLESSG  240
KKNSKSSGHK SRANNSEDKG DNDENSDVFQ LGKGGKRSTR SSRGKSRANK SEDKSDTGTD  300
SNVPQLGNSG KRITRSSSKG KK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-139LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-139LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136984.10.0PREDICTED: B3 domain-containing protein At3g19184-like isoform X1
SwissprotQ1G3M34e-86Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A0A0K4S80.0A0A0A0K4S8_CUCSA; Uncharacterized protein
STRINGXP_004166666.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-82B3 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]