PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.219930.1 | ||||||||
Common Name | Csa_7G073740, LOC101206354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 323aa MW: 36466.4 Da PI: 9.7393 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.4 | 4.8e-17 | 128 | 217 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h ++e+ ltl de+ ++++ k+ +k++ l++GW++F +++L +gD +vF+l++ +ef +v Cucsa.219930.1 128 FVKPMLQSHVSGGFWLGLPVQFCKTHL--PREDEILTLVDEDENEFQTKYLADKTG----LSGGWRGFSIDHQLVDGDALVFQLTNPTEF--KVY 214 89************************4..345568***************666666....***********************9775666..888 PP EE- CS B3 96 vfr 98 ++r Cucsa.219930.1 215 IIR 217 887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-21 | 119 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-24 | 121 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.70E-26 | 126 | 217 | No hit | No description |
SMART | SM01019 | 2.7E-20 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-15 | 128 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.857 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MVESNLTYEE CRRQRLEENK KRMEELNLNK LADAFKSSSP KSSPTKQLKR PRQTLDASSF 60 SVRRSSRFSD KPPMNYKEVP IEPLPGIRRS YQRRDLLNRI YASDEERQYA IDRARDLQSS 120 LESEYPSFVK PMLQSHVSGG FWLGLPVQFC KTHLPREDEI LTLVDEDENE FQTKYLADKT 180 GLSGGWRGFS IDHQLVDGDA LVFQLTNPTE FKVYIIRTYN SADKEDTKEG SDATQLESSG 240 KKNSKSSGHK SRANNSEDKG DNDENSDVFQ LGKGGKRSTR SSRGKSRANK SEDKSDTGTD 300 SNVPQLGNSG KRITRSSSKG KK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 1e-139 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 1e-139 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136984.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g19184-like isoform X1 | ||||
Swissprot | Q1G3M3 | 4e-86 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A0A0K4S8 | 0.0 | A0A0A0K4S8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004166666.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-82 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.219930.1 |
Entrez Gene | 101206354 |
Publications ? help Back to Top | |||
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