PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.215290.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 334aa    MW: 37333.5 Da    PI: 9.7823
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.215290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.82.9e-32882052112
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec.eaesssssasnsssg. 88 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ ++ +sa      +++  + + ++       + 
  Cucsa.215290.1  88 FGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSAslglhyQSMiPTTTTVV-------Hp 175
                     689*************************************************************6666633333311121111111.......11 PP

             TCP  89 ...............kaaksaakskksqksaasalnlak 112
                                    +       ++++q++++  +n+++
  Cucsa.215290.1 176 hrsefkiidkagvedE-------TEQKQHKSN--SNPSH 205
                     2222334432222221.......111222222..22222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.67190148IPR017887Transcription factor TCP subgroup
PfamPF036345.3E-2990203IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPCGNKKRGF FFSLKKKNQY AGTRFEASCS IINLEEQLLK AQEHTSGYQC LCVKNSPPPK  60
LAAGSSSSSA TPWLRLKDPR IVRVSRAFGG KDRHSKVCTI RGLRDRRVRL SVSTAIQLYD  120
LQDRLGLNQP SKVVDWLLNA AKDEIDELPP LPIPSASLGL HYQSMIPTTT TVVHPHRSEF  180
KIIDKAGVED ETEQKQHKSN SNPSHPNSSF SALLNNVSAP PFGFYWDHNP PSSSSSTTNN  240
NLPFLTSQAG DNNNNNNLHT FNHLNLSLPP SPLSLSTASQ FLEFNHLHQN FFINNNSNNN  300
NPSFHPNVRP FHFSMATKFL PHQDKNNNNV DPPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1995149155Putative transcription factor PCF6
5zkt_B1e-1995149155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818670.0LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137255.20.0PREDICTED: transcription factor TCP17-like isoform X2
RefseqXP_011653417.10.0PREDICTED: transcription factor TCP17-like isoform X1
TrEMBLA0A0A0KVZ70.0A0A0A0KVZ7_CUCSA; Uncharacterized protein
STRINGXP_004173648.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-47plastid transcription factor 1