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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Cucsa.213120.3 | ||||||||
| Common Name | Csa_1G472480 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 281aa MW: 31707.6 Da PI: 6.0931 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 50.8 | 4.4e-16 | 24 | 114 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ + +Li+a ++ +l+rg+l++++W++v++ + ++ +r+ +qCk++++ ++k+yk ++++ + + + +s++p++ +l+
Cucsa.213120.3 24 CWSEDATSTLIDAWGRRFLDLNRGNLRQKDWQDVADSVnslhgLTKKTHRTDVQCKNRIDTVKKKYKTERARVSASHGNFVSSWPFYARLD 114
7**************************************9999999*************************99999999*********998 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 2.2E-25 | 22 | 116 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 281 aa Download sequence Send to blast |
MGDLTDSLTP SSANSRQLPI REDCWSEDAT STLIDAWGRR FLDLNRGNLR QKDWQDVADS 60 VNSLHGLTKK THRTDVQCKN RIDTVKKKYK TERARVSASH GNFVSSWPFY ARLDELIGPT 120 VSMKKPSSPP LALPLPFRKT PPPSAAASSA VVAVSQKRSA AAMDHVSFRR NYSAMAAAAA 180 AVALSEEEED EEEEEEEEER VSDDEEAEGE GMSRLARAIK RFGEVYERVE AEKVRQMVEL 240 EKQRMQFAKD LELQRMHMFM ETQVQLERIK RGKKSTPSDM * |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
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| Source | Hit ID | E-value | Description | |||
| GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
| GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. | |||
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011657705.1 | 1e-172 | PREDICTED: trihelix transcription factor ASIL2-like isoform X3 | ||||
| TrEMBL | A0A0A0LX81 | 1e-168 | A0A0A0LX81_CUCSA; Uncharacterized protein | ||||
| STRING | XP_004151226.1 | 0.0 | (Cucumis sativus) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G58630.1 | 3e-41 | sequence-specific DNA binding transcription factors | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Cucsa.213120.3 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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