PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.212790.1

Common Name

Csa_1G467200, LOC101204637

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

BES1

Protein Properties

Length: 328aa MW: 35348.4 Da PI: 8.8004

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.212790.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	209.2	1.1e-64	2	147	1	150
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 ++++r+ptwkErEnnkrRERrRRaiaaki+ GLR++Gnyklpk++DnneVlkALc eAGw+ve+DGttyrkg+kp e +++g sasasp+ss+q Cucsa.212790.1 2 TSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKGCKPV-ERNIMGGSASASPCSSYQ 95 5899**********************************************************************.999*********** PP DUF822 96 sslkssalaspvesysaspksssfpspssldsislasa.....asllpvlsvlslvsssl 150 +sp++sy++sp+sssfpsp+s+ +++ ++ +sl+p+l++ls+ sss+ Cucsa.212790.1 96 --------PSPRASYNPSPASSSFPSPKSSRYAMNGNDngtdpNSLIPWLKNLSSGSSSA 147 ........**************99887766554468999********9977764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.0E-66	3	141	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MTSGTRMPTW KERENNKRRE RRRRAIAAKI FLGLRMYGNY KLPKHCDNNE VLKALCDEAG 60 WTVEEDGTTY RKGCKPVERN IMGGSASASP CSSYQPSPRA SYNPSPASSS FPSPKSSRYA 120 MNGNDNGTDP NSLIPWLKNL SSGSSSASSR LPHHLFINCG SISAPVTPPS SSPTARTPRK 180 PNDWDNHPAV APAWAAQRFS CLPTSTPQSP GRQVLADPAW LDSIRIPQSG PSSPTFSLVA 240 RNPFGFKEAM SAGVSRNWTP TQSGTCSPTV AAGIDHTSDV PMTDGTATDF AFGSCSIGLV 300 KPWEGERIHE ECISDDLELT LGNSSTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-24	6	85	372	451	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-24	6	85	372	451	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-24	6	85	372	451	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-24	6	85	372	451	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147390.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4-like
Swissprot	Q9ZV88	1e-120	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A0A0M073	0.0	A0A0A0M073_CUCSA; Uncharacterized protein
STRING	XP_004172293.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2661	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	6e-92	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Cucsa.212790.1
Entrez Gene	101204637

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]