PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.212720.3 | ||||||||
Common Name | Csa_1G467100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20659.5 Da PI: 10.0684 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100 | 9e-32 | 33 | 82 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Cucsa.212720.3 33 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 82 79***********************************************8 PP | |||||||
2 | K-box | 97.5 | 2e-32 | 103 | 180 | 6 | 83 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 ++ea+++ +qqe+akL+++i nLq+ +RhllGe+++sLs+k+L++Le +Lek++++iRs+Knell+++ie++qk+ Cucsa.212720.3 103 AMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180 44599***********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-41 | 25 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.375 | 25 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.44E-42 | 26 | 95 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-33 | 26 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-33 | 27 | 47 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 27 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-27 | 34 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-33 | 47 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-33 | 62 | 83 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-23 | 108 | 180 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.463 | 111 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MSCYEEEDEE SGVVGLRRSS SSSRTGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS 60 VLCDAEVALI VFSSRGRLYE YANNSVRATI SRYKKAYSDP STAMTVSEAN TQFYQQESAK 120 LRAQIGNLQN LNRHLLGESI SSLSVKDLKS LEVKLEKGIS RIRSRKNELL FSEIEYMQKR 180 V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-22 | 26 | 105 | 2 | 80 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-22 | 26 | 105 | 2 | 80 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-22 | 26 | 105 | 2 | 80 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-22 | 26 | 105 | 2 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-22 | 26 | 105 | 2 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-22 | 26 | 105 | 2 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-22 | 26 | 105 | 2 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-22 | 26 | 105 | 2 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-22 | 26 | 105 | 2 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-22 | 26 | 105 | 2 | 80 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF022378 | 0.0 | AF022378.1 Cucumis sativus agamous-like putative transcription factor (CAG2) mRNA, complete cds. | |||
GenBank | X97801 | 0.0 | X97801.1 C.sativus CUS1 mRNA for put. transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267656.1 | 1e-127 | floral homeotic protein AGAMOUS-like | ||||
Refseq | XP_011651593.1 | 1e-127 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Swissprot | Q43585 | 2e-90 | AG_TOBAC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | Q43422 | 1e-126 | Q43422_CUCSA; Putative transcription factor | ||||
STRING | XP_004147393.1 | 1e-126 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42830.2 | 2e-85 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.212720.3 |
Entrez Gene | 101205366 |
Publications ? help Back to Top | |||
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