PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.207460.1

Common Name

Csa_1G089510, LOC101216100

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 313aa MW: 34769 Da PI: 7.6175

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.207460.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.6	1.8e-40	38	99	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Cucsa.207460.1 38 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVGGGCRKNKRSSS 99 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	26	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-34	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.655	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDLPTAQHHQ EMETNSVENM MVCQNSKDHQ VRKARPQPEQ ALKCPRCDST NTKFCYYNNY 60 SLSQPRYFCK SCRRYWTQGG TLRNVPVGGG CRKNKRSSSS SSSSASSKKS QDHPFGASTA 120 LPGQLSYDHQ AHDLSLAFAR LHKNSCSNGS VPTFNDFDFS ILGMPNGDVL NGGGFAYNSQ 180 SLYYGNDNNM GAGIESNGDQ MRLQPYDHDH HHHHHNQQYS NATTTAVTVT TMKQELFGGR 240 EMNNGSDQSK ILWGYPNWQM NNNNNNVIDS NTTTTTMMGA MDFDSGSARE SWNSNAFTNA 300 SSWHGLLNSP LM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	0.0	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147273.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	A0A0A0LSJ8	0.0	A0A0A0LSJ8_CUCSA; Uncharacterized protein
STRING	XP_004147273.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	6e-41	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Cucsa.207460.1
Entrez Gene	101216100

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]