PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.207400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 21683.9 Da PI: 7.7385 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.7 | 1.7e-42 | 31 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll +lp+++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+aela Cucsa.207400.1 31 PCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELA 125 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Cucsa.207400.1 126 KTQAE 130 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.294 | 30 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-41 | 31 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
PTSTLLLSHS PSPSPSPSPP PTVQAHVVVT PCAACKILRR RCTQKCVLAP YFPPSDPLKF 60 TIAHRIFGAS NIIKLLLDLP DSQRADAVSS LVYEASARIR DPVYGCAGAI CQLQKQINEL 120 QAELAKTQAE LVNIHCHQTN LVALICKELA QTPPPMSSSS LLPEHRSLDN SFNIVATPQS 180 YQGYTSLFGD SNIWDPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 30 | 142 | 10 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 30 | 142 | 10 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681928 | 1e-176 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. | |||
GenBank | LN713266 | 1e-176 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147299.1 | 1e-145 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 8e-64 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A1S3CK12 | 1e-120 | A0A1S3CK12_CUCME; LOB domain-containing protein 1-like | ||||
STRING | XP_004147299.1 | 1e-144 | (Cucumis sativus) | ||||
STRING | XP_004161319.1 | 1e-144 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-65 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.207400.1 |