PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.205010.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRAS

Protein Properties

Length: 765aa MW: 87266.5 Da PI: 4.8589

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.205010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	216.4	1.5e-66	441	764	2	338
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfsh 95 ++L+++Ae v +++ + ++lL+r + +asp+g+++qR++ yf++AL++++ r ++ +a++ ++++ e++ ++l P+ ++ h Cucsa.205010.1 441 AHVLFAAAEKVGYQQFDRGSRLLQRCEWTASPYGNAIQRVVYYFAKALRKKIER--ETGREAIKEQQEE------EINLDTLrTCMKLPFQQVMH 527 799*************************************************..4444444444444......3343333223346*** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 lta qaI e v+ +++H iD++i G++W a++q+L ++ + l+iT+v+ ++ + + ++g+ L+++Ae+l++pf+f+v+ ++++ ++ Cucsa.205010.1 528 LTAVQAIFEHVKLINKIHLIDLEIRSGVHWSAFMQSLVdLKELPIKLLKITAVVT---DKYQLIDQVGKWLENVAESLNIPFSFKVIFVSDMIEI 619 **********************************445567779****...578899*************************** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eeri 283 + e ++++ +E++a+ + l l ++ +++ sle+ ++k++++l+P ++vv+e ea++n +sF++rf+e l + +++fd+l++ + +++ + r+ Cucsa.205010.1 620 KEELFETEDDEMVAIYCPLVLRNMISRPSSLEN----LMKVIRNLNPSIMVVSEIEANYNLPSFVNRFIEVLFFTASFFDCLKTCIEEDDeDSRR 710 *********************99999999....*********************************************999967788 PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 k+E g+ ++n++a eg++r+ r + e Wr+ + ++ ++++++s+ +qak Cucsa.205010.1 711 KIEGL-CGKGVENALASEGSDRVVRSVKIEVWRAFFARFRMEEMEFSDLCLSQAK 764 88877.9******************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.207	414	765	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-64	441	764	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence Send to blast
MAMAFQKWPQ NPNFLFKKLF HLFTLTLLSL SLPISFLLFC RLVHSHYLHA FLPLSSPLPS 60 ILSADRLLLL ALISFISISA FLDNLFGKSI LPSKSSGLSA AWFVLCVLQI GMALGIGQEL 120 TIVIDESSLG LRGSLWCRLM FFLGLHTAMI HWSNVAVKPV VDDTVFGAPV EENWSEKIVM 180 AVSFGGLWWW RLRDEAESPA MVTESMMELL MDPTMADFCS LALYYLIVAI GFVRILRSFV 240 CGSQPGTFFP SNGGVHEKQE TEQRGKEDDC PFRMDEFGDF NFPSANQFGF YQQDISKIGD 300 QTNYEHPNTD CLIFDELLFG NDFNISEFIQ EKSKISESLA ADSISFNSNK QVSNPCLDSL 360 QLLNSYGTKV KRMNGENLNK RGDEVNEENK TLSTEEILRV AGARYVHFFP EGHDDFYMLT 420 HPCDFALSGL SKDEREDVEL AHVLFAAAEK VGYQQFDRGS RLLQRCEWTA SPYGNAIQRV 480 VYYFAKALRK KIERETGREA IKEQQEEEIN LDTLRTCMKL PFQQVMHLTA VQAIFEHVKL 540 INKIHLIDLE IRSGVHWSAF MQSLVDLKEL PIKLLKITAV VTDKYQLIDQ VGKWLENVAE 600 SLNIPFSFKV IFVSDMIEIK EELFETEDDE MVAIYCPLVL RNMISRPSSL ENLMKVIRNL 660 NPSIMVVSEI EANYNLPSFV NRFIEVLFFT ASFFDCLKTC IEEDDEDSRR KIEGLCGKGV 720 ENALASEGSD RVVRSVKIEV WRAFFARFRM EEMEFSDLCL SQAKL

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence Send to blast

MAMAFQKWPQ NPNFLFKKLF HLFTLTLLSL SLPISFLLFC RLVHSHYLHA FLPLSSPLPS  60
ILSADRLLLL ALISFISISA FLDNLFGKSI LPSKSSGLSA AWFVLCVLQI GMALGIGQEL  120
TIVIDESSLG LRGSLWCRLM FFLGLHTAMI HWSNVAVKPV VDDTVFGAPV EENWSEKIVM  180
AVSFGGLWWW RLRDEAESPA MVTESMMELL MDPTMADFCS LALYYLIVAI GFVRILRSFV  240
CGSQPGTFFP SNGGVHEKQE TEQRGKEDDC PFRMDEFGDF NFPSANQFGF YQQDISKIGD  300
QTNYEHPNTD CLIFDELLFG NDFNISEFIQ EKSKISESLA ADSISFNSNK QVSNPCLDSL  360
QLLNSYGTKV KRMNGENLNK RGDEVNEENK TLSTEEILRV AGARYVHFFP EGHDDFYMLT  420
HPCDFALSGL SKDEREDVEL AHVLFAAAEK VGYQQFDRGS RLLQRCEWTA SPYGNAIQRV  480
VYYFAKALRK KIERETGREA IKEQQEEEIN LDTLRTCMKL PFQQVMHLTA VQAIFEHVKL  540
INKIHLIDLE IRSGVHWSAF MQSLVDLKEL PIKLLKITAV VTDKYQLIDQ VGKWLENVAE  600
SLNIPFSFKV IFVSDMIEIK EELFETEDDE MVAIYCPLVL RNMISRPSSL ENLMKVIRNL  660
NPSIMVVSEI EANYNLPSFV NRFIEVLFFT ASFFDCLKTC IEEDDEDSRR KIEGLCGKGV  720
ENALASEGSD RVVRSVKIEV WRAFFARFRM EEMEFSDLCL SQAKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-27	469	765	32	338	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	0.0	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136152.1	0.0	PREDICTED: DELLA protein RGL2
TrEMBL	A0A0A0K9I9	0.0	A0A0A0K9I9_CUCSA; Uncharacterized protein
STRING	XP_004136152.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-39	RGA-like 2

Link Out ? help Back to Top
Phytozome	Cucsa.205010.1