PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.204850.1
Common NameCsa_7G412880, LOC101218038
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 425aa    MW: 47850.4 Da    PI: 9.5132
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.204850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07129171346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE ++l d+++++  + +  Ia +++  Rt +++k+r++ 
   Cucsa.204850.1 129 SWTKEETDQLFDLCERFDLR-FIVIADRFPSARTVEELKERYYR 171
                      6*******************.*********99**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162825.0E-31102176IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466892.85E-6125173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-6125172IPR009057Homeodomain-like
SMARTSM007173.4E-7126175IPR001005SANT/Myb domain
CDDcd116589.36E-19130172No hitNo description
PfamPF054992.2E-7226383IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDAKDILGLP KNTLPLPQEK KPRAQKDAQR KRDGISREVY ALTGGLAPIM PAIDVSELKK  60
RPPSDEKITW QWLPFSNSAR KDNLQLYHWV RVVNGIPPTG DYSFAKYNKS VEVVKYTDEE  120
YEKYLKDASW TKEETDQLFD LCERFDLRFI VIADRFPSAR TVEELKERYY RVSRAIVAAR  180
GSISRESSGN TPAKDPYNVS QEIERKRALS MVLSQTKQQE RKDAEVLAEA KKITEARKAE  240
RVAEESELPV TSNAVPEVTE RVVVPGDNVP SISNVQPPPP AAVPSTVVAD NASTLASLRM  300
LPVYLRTYAL EQMVQAASSS AGLRTIKRVE QTLQDLSVNL KPRVPTKAVC AEHLELRKEI  360
LTLLNLQKQL QNKEAEGSSF RDSPYTEAPG TPKHSCHALV QDRTFIADSV SFGGERFGKR  420
DQKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A1e-22101181488DNA methyltransferase 1-associated protein 1
4iej_A1e-22101181488DNA methyltransferase 1-associated protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11931KKPRAQKDAQRKR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818034e-86LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132554e-86LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659406.10.0PREDICTED: DNA methyltransferase 1-associated protein 1
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A0A0K9K00.0A0A0A0K9K0_CUCSA; Uncharacterized protein
STRINGXP_004164658.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49752330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]