PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.201400.1
Common NameCsa_4G038690, LOC101211368
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 590aa    MW: 64872.8 Da    PI: 4.8336
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.201400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.89.5e-1112185893374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++Ll+cA+  +s + ++a ++L+r+s+   +dgdp++R+ +yf  AL++rl++  + + + l ++e++  ns++ l ++k++++++P+ kf+hlt
  Cucsa.201400.1 218 KVLLDCARLCDS-EPNRAAKTLNRISKSLREDGDPIERVGFYFGDALRKRLSS--TPMKNCLDSTESD-ANSEDFLLSYKALNDACPYSKFAHLT 308
                     78******8877.67788899*******************************9..6666666666664.7899********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aNqaIle +e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ + + +e+l
  Cucsa.201400.1 309 ANQAILEVTERASKIHIVDFGIVQGVQWAALLQALATRATGKPvRVRISGIPAPSLGdsPAASLYATGNRLSEFAKLLELNFEFQP-ILTPIENL 402
                     ***************************************77777**********99998999************************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + ++++v+++E+laVn++lql++llde+ +  +   + L+l kslsP++v++ e ea++n++ F +rf +al++ysa+f+sle +lpr+s er  
  Cucsa.201400.1 403 KESSFSVQSDEVLAVNFMLQLYNLLDENPTGVH---NALRLAKSLSPHIVTLGEYEASLNRNGFYNRFKNALKFYSAIFESLEPNLPRNSPERLQ 494
                     *************************99988888...9********************************************************** PP

            GRAS 285 vErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     +Er llgr+i  vv + +++   rr r+e +e+W++ +e+ GF+pv+ls++a +qak ll +++ s  y++ e+  +++ l W+d pL++vS+Wr
  Cucsa.201400.1 495 LERLLLGRRIAGVVGTVEDSrreRRVRMEDKEQWKNLMENTGFEPVALSHYAISQAKILLWNYNySSLYTLIESAPEFLsLAWNDVPLLTVSSWR 589
                     ***********9998766651115567999**********************************9999*****9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.26190567IPR005202Transcription factor GRAS
PfamPF035143.3E-108218589IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQLIN QKQQQDQQQH HLSPLSPFSI LPWTNNINPS STMASSSSSP  60
NFSFGISSSS FSDPFHVAAP PDSSDPSFHF PNLDHPSAGF RFFPNFSGAG GEFESDEWMD  120
SLVGGGDSTD SSTLPSGCEG YGEFGLYGAD PFNGSQPSAV VLESSYKINS VPPPWPSCPP  180
LVKEERVTNP PAESPLKNDV VEGSSSALEV ESSSPVLKVL LDCARLCDSE PNRAAKTLNR  240
ISKSLREDGD PIERVGFYFG DALRKRLSST PMKNCLDSTE SDANSEDFLL SYKALNDACP  300
YSKFAHLTAN QAILEVTERA SKIHIVDFGI VQGVQWAALL QALATRATGK PVRVRISGIP  360
APSLGDSPAA SLYATGNRLS EFAKLLELNF EFQPILTPIE NLKESSFSVQ SDEVLAVNFM  420
LQLYNLLDEN PTGVHNALRL AKSLSPHIVT LGEYEASLNR NGFYNRFKNA LKFYSAIFES  480
LEPNLPRNSP ERLQLERLLL GRRIAGVVGT VEDSRRERRV RMEDKEQWKN LMENTGFEPV  540
ALSHYAISQA KILLWNYNYS SLYTLIESAP EFLSLAWNDV PLLTVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1432135891375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149153.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0A0KXW60.0A0A0A0KXW6_CUCSA; Uncharacterized protein
STRINGXP_004149153.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-180GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]