PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.201240.1 | ||||||||
Common Name | Csa_4G043850, LOC101221080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 208aa MW: 24174.1 Da PI: 7.6599 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.5e-20 | 57 | 111 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t+ q++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Cucsa.201240.1 57 KKRKLTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 111 45689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 117.2 | 9e-38 | 57 | 147 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l++ qv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+ +++++ e++rLe+e +L+e+l Cucsa.201240.1 57 KKRKLTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETELLKLKEQLL 147 9**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.746 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-18 | 55 | 116 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-18 | 56 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.15E-14 | 57 | 113 | No hit | No description |
Pfam | PF00046 | 3.5E-17 | 57 | 111 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-21 | 59 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MNQQQTDQEH QSVQISQLYN GLYIQMLPQQ VHLGESKPRR RRKKNRGSET EAASGGKKRK 60 LTAAQVRLLE SNFGSEHKLE SERKDRLASE LGLDPRQVAV WFQNRRARWK NKKLEEEYSN 120 LKKLHESVVV EKCRLETELL KLKEQLLEVE KEKERVRMGE GGDGPLSSSS PSPSMSMEAM 180 EMEQPISLGE ISPLYEEDVF YYMPENYX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 59 | RKKNRGSETEAASGGKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 1e-153 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 1e-153 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146482.1 | 1e-149 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 1e-58 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A0A0KWL3 | 1e-147 | A0A0A0KWL3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146482.1 | 1e-148 | (Cucumis sativus) | ||||
STRING | XP_004172400.1 | 1e-148 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-45 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.201240.1 |
Entrez Gene | 101221080 |
Publications ? help Back to Top | |||
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