PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.199060.1 | ||||||||
Common Name | Csa_1G023060, LOC101219232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 26726.7 Da PI: 8.1577 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.2 | 1.3e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl++eA+ r+ +P+ G++g+++++++ql+q Cucsa.199060.1 4 SCNGCRVLRKGCSESCSIRPCLqwiksPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQD 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ Cucsa.199060.1 99 AVEAVLKGA 107 **9988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.973 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-22 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSESCS IRPCLQWIKS PQSQANATFF LAKFYGRAGL VNLINAGPDH 60 LRPAIFKSLL FEACGRIVNP IFGSAGLLWS GSWQLCQDAV EAVLKGAPIL PVSSETAASH 120 MGPPLKGCDI RHVSKQQDSA SGSAVRKIKT RRRFKRSGTA KLKPKEEPSV VVVPEFKFDD 180 QTQIVSEPQC LKFELDNWKG RESPEKDCGS DDTECLSVET VEGCQGGDVE LELTLGFGQS 240 WMLT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138241.1 | 0.0 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 5e-83 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A0A0LPS5 | 1e-179 | A0A0A0LPS5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004154919.1 | 1e-180 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-84 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.199060.1 |
Entrez Gene | 101219232 |
Publications ? help Back to Top | |||
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