PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.199050.1
Common NameCsa_1G023050, LOC101203630
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 361aa    MW: 41631 Da    PI: 5.061
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.199050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.92e-081355339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +r+C+ +  k++++fC  ++ +lC++C ++ H+       H++
  Cucsa.199050.1 13 ARVCDSCLCKRARWFCAADDAFLCQSCDVSVHSAnqlarrHDR 55
                    689*****************************65677777776 PP
2CCT68.22.2e-23315358144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++
  Cucsa.199050.1 315 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRMKGRFVKRT 358
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9931158IPR000315B-box-type zinc finger
SMARTSM003362.8E-91158IPR000315B-box-type zinc finger
PfamPF006435.0E-81356IPR000315B-box-type zinc finger
CDDcd000213.65E-81446No hitNo description
PROSITE profilePS5101716.043315357IPR010402CCT domain
PfamPF062036.1E-18315357IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTTSTAMTGG RTARVCDSCL CKRARWFCAA DDAFLCQSCD VSVHSANQLA RRHDRIRLET  60
SSFNSTDHLP PTPWLKGFTR KARTPRSNNN NNKISSSKAS VFSIVPEIGN DNELGFSIDE  120
NDDEHHQFLG HQQEVPVFDP LFDDQKLLLT DELEDFGDGF LPSEVDLAEF VADVENLLGR  180
QDDEEQQQQD HDGNTNIIVK VKDEDLVQDC INKNNNHNGY LMDWDFKEEI EEEEEEELKI  240
KNKKNIISLR LNYDAVITAW DAQSSPYTTG NRPQFDLDDC WEEWSGVCSK GGRNVVVDDQ  300
EWRGRNNNGI SNEEREARVS RYREKRRTRL FSKKIRYQVR KLNAEKRPRM KGRFVKRTTT  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325341RRTRLFSKKIRYQVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648856.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0A0LSN30.0A0A0A0LSN3_CUCSA; Uncharacterized protein
STRINGXP_008453390.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.14e-65B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]