PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.198860.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 357aa    MW: 40542.2 Da    PI: 8.8226
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.198860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.22.1e-36992543132
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssssa 82 
                      k+drhski T  g+RdRR+Rls+++a++fF Lqd+LG+dk+skt+eWLl qa +aik+l ++               s     ++++++ +s  
  Cucsa.198860.1  99 SKRDRHSKINTLHGPRDRRMRLSLPVAKEFFGLQDMLGVDKASKTVEWLLFQARHAIKKLSKDqqsfhidgngdtrspS-----SVSDGEVVSGI 188
                     69*************************************************************8888888777532220.....22222222222 PP

             TCP  83 snsssg................kaaksaakskksqksaasalnlakesrakarararertrekmri 132
                       ++s+                ++++++++++++  ++  ++ l +e r+kararar r rek+++
  Cucsa.198860.1 189 IDETSTvvnnndmistkeleigRKSTTKKEKRSRVGRKMPFNPLTRECREKARARARARAREKQQQ 254
                     2111113333344456677776888888777777788888899999***************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-4199254IPR005333Transcription factor, TCP
PROSITE profilePS5136930.997100158IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.713234251IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MFVFNSCSNN NHGNDCISFP DHSFLHFPSP FDDDGNPTNS LLLQQQSQHD IFLHHHIPLN  60
EPSPPPPSST FVNALRSSET INNDVFHQDL VSQRKKSSSK RDRHSKINTL HGPRDRRMRL  120
SLPVAKEFFG LQDMLGVDKA SKTVEWLLFQ ARHAIKKLSK DQQSFHIDGN GDTRSPSSVS  180
DGEVVSGIID ETSTVVNNND MISTKELEIG RKSTTKKEKR SRVGRKMPFN PLTRECREKA  240
RARARARARE KQQQIKGTST TTKLQDVSKI SSPWMSSTQM ENNGIDEQLR TRNEGRIIMD  300
HETTDDCLIM GRWSPSNSIY CNSLHNNNNG SPQEHPYGDF QFLVKSWEPY NNHSIC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648749.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A0A0LPQ90.0A0A0A0LPQ9_CUCSA; Uncharacterized protein
STRINGXP_008453366.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.24e-18TCP family protein