PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.198300.1
Common NameCsa_1G014310, LOC101218680
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 409aa    MW: 44714.3 Da    PI: 9.0737
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.198300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP85.21.6e-2662161385
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................ssssas 71 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+L + ++sk i+WLl   k  i+ l+ +                          +     
  Cucsa.198300.1  62 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDNLPPLqippgfspfhqqmlfpqyvdphhhyyT----- 151
                     79*************************************************************555555555555555543332222221..... PP

             TCP  72 eceaesssssasns 85 
                         +sssss+s+s
  Cucsa.198300.1 152 ----SSSSSSSSSS 161
                     ....1111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-2363220IPR005333Transcription factor, TCP
PROSITE profilePS5136926.10363121IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MLRNNSKDQK GCEAKEEGVL VRSSSNNNND GKYSFPKAPT SSSRQWSGFR NPRIVRVSRS  60
FGGKDRHSKV CTIRGLRDRR IRLSVPTAIQ LYDLQDKLKL GQPSKVIDWL LDVTKLDIDN  120
LPPLQIPPGF SPFHQQMLFP QYVDPHHHYY TSSSSSSSSS SSSSRFCNSL PPPFMLDVKS  180
TDAYQTTMTV EKTKLWDMDL AVLQDKAGSA TTAATTTKGK WIDGSNNDSN STQQVEDYNE  240
QISSQKLLSM AICSSNLPNM MNNNNSTPYN NYNSSHDHNH RQQPSCLSLS QFGNNNNSNG  300
VFPSQLVETA AQGSNSSSSS SSLFFTPYAS YITNPFESHI HFLSSNSHAL SNPFMSSSLH  360
PFATSQNLKP FPPPSFNLKQ LFHAADTNNA GGSAGAGSSA KDGAAGNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1668122155Putative transcription factor PCF6
5zkt_B2e-1668122155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648477.10.0PREDICTED: transcription factor TCP5-like
TrEMBLA0A0A0LRU60.0A0A0A0LRU6_CUCSA; Uncharacterized protein
STRINGXP_008453284.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.18e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]