PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.197700.1 | ||||||||
Common Name | Csa_1G009740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Nin-like | ||||||||
Protein Properties | Length: 204aa MW: 23562.6 Da PI: 8.4506 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.2 | 2.2e-25 | 64 | 114 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s +++++y+++pi++AAkeL+v+lT+LK++CR++GI RWPhRk+ s+ Cucsa.197700.1 64 SKMLSRKVIQEYYYMPITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSI 114 57899*******************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.95 | 50 | 134 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-20 | 67 | 114 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDNGVFGVVE EEPPLLLLEC GENEEKEEMV VSNKKGKKRS MRLKSENECS NNNSNNNGSC 60 YSSSKMLSRK VIQEYYYMPI TQAAKELNVG LTLLKKRCRE LGIGRWPHRK LMSIQTLIKN 120 IKELIEKGDD EEGNGSENYK LKNVLEILEN EKKLMEERPD LQLEDNTKRL RQACFKANYK 180 KRKLSGLIIN NNNNNNIDDI NSQX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 1e-128 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 1e-128 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011660335.1 | 1e-142 | PREDICTED: protein RKD1-like | ||||
Swissprot | Q9M9U9 | 4e-50 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A0A0LP42 | 1e-140 | A0A0A0LP42_CUCSA; Uncharacterized protein | ||||
STRING | XP_004155063.1 | 1e-143 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6184 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 2e-50 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.197700.1 |
Publications ? help Back to Top | |||
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