PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.196550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 361aa MW: 40969.4 Da PI: 6.9169 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++ +G g+W+++++ g+ R++k+c++rw +yl Cucsa.196550.1 14 KGLWSPEEDEKLFNYITTFGVGCWSSVPKLAGLERCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 9.6e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ Cucsa.196550.1 67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.421 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.03E-10 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.645 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.0E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.11E-9 | 70 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGRNSCCLKP KLRKGLWSPE EDEKLFNYIT TFGVGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPTTHKPLE ENMEAMKDAK KNSYNNERPK MEAIHHHHHH HLHGNVSNIT EESSQHFVNK 180 IEFDSLSSYL NGEYNNNSQF ASAQYNSNIR SYDQNFFYSN SSIGMGSYSS CEHGNMSRTD 240 FSENNSASGL TSFLMNEVKE SSSNSSVVSN YSGYHMNNPG ENNNNNNGGG FSWESSENKL 300 ENLLEFQTNQ MKNLEFKGSS SVEETKIIQN QINSATFGSY PLMSMSENER AGSFGIFHHI 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 7 | 116 | 20 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681814 | 0.0 | LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138267.1 | 0.0 | PREDICTED: transcription factor MYB32-like | ||||
TrEMBL | A0A1S3CLT8 | 0.0 | A0A1S3CLT8_CUCME; transcription factor MYB32-like isoform X1 | ||||
STRING | XP_004155089.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5831 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-80 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.196550.1 |