PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.195730.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 406aa    MW: 44628.9 Da    PI: 8.4737
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.195730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47e-29182240259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ ++itY  +Hnh+
  Cucsa.195730.1 182 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTKLVITYAFDHNHQ 240
                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-30173242IPR003657WRKY domain
SuperFamilySSF1182901.09E-24177242IPR003657WRKY domain
SMARTSM007742.5E-34181241IPR003657WRKY domain
PROSITE profilePS5081131.192182242IPR003657WRKY domain
PfamPF031061.1E-24183240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MTTLCIKPHL ILSLLIPFFT ISPPPISLFL FSFSLISALR FIQQFPSPPI YLLISSILSL  60
FLPWTAVFVQ THSSPNRKIP KPPPTTAYPN HPPTAMTQNP PPLLHLLRRG LFQIQFNFIS  120
LSFFLFIRNT HTHTYFNLTV FVFVWGFFLD TYSRRGVQKR VVSVPITDVE GSKSKGEAYP  180
PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSRVDPTKLV ITYAFDHNHQ  240
LPVTKSHHHH HHNSSPSSAV IAAVSAATDF PSPGSTTTSS STSSGDNTNA APSSPAAKFE  300
EAAAVFASQP ELELGGDSLM IKPCIGDFGW LGEVAYDRIL EGPICGGGDI FDDADVMVLS  360
TRGDDEEESL FADLGELPEG SVVFGRRRTV QPNGPNRTCG TVLNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-19159242679Disease resistance protein RRS1
5w3x_D6e-19159242679Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840330.0GU984033.1 Cucumis sativus WRKY protein (WRKY47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267628.10.0probable WRKY transcription factor 69-like
TrEMBLE7CEY20.0E7CEY2_CUCSA; WRKY protein
STRINGXP_004136834.10.0(Cucumis sativus)
STRINGXP_004173464.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.11e-52WRKY DNA-binding protein 69