PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.195640.1
Common NameCsa_7G049250, LOC101211149
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 308aa    MW: 34030.8 Da    PI: 6.8351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.195640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-0684104526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f+r G C +Gd C FaHg
  Cucsa.195640.1  84 MCPEFRR-GGCGRGDGCEFAHG 104
                     6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.05479105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.58280106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-583106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4111142IPR000571Zinc finger, CCCH-type
SMARTSM003561.6114137IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484114138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSSDSPRFSY AVESLLQKFL PFNGEDELEE DGDPYSSDHF RMYEFKVRRC TRSRSHDWTD  60
CPFAHPGEKA RRRDPRRFHY SGTMCPEFRR GGCGRGDGCE FAHGVFECWL HPARYRTEAC  120
KDGKNCKRKV CFFAHSPREL RLLPPVSNFQ TAAVTSSPTS TLFGMSHLSP PHSPPHSPGK  180
PINGFSPISR YNPDQSKLNG VLSYKDALTE LMSSIESMNM DDANATLAAA AAAASGPRQT  240
IPWIDVSSLN NEDQLQFVLS PSTPNVSTAS VKFSVENNNN NGWASAYASA STSASDPDLG  300
WVNDLLM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136841.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA12e-85C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0A0K2E31e-180A0A0A0K2E3_CUCSA; Uncharacterized protein
STRINGXP_004136841.10.0(Cucumis sativus)
STRINGXP_004155466.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-75C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]