PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.193290.1 | ||||||||
Common Name | Csa_5G146310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 400aa MW: 44545.4 Da PI: 7.4737 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.2 | 2.6e-31 | 57 | 161 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f+kv tpsdv+k++rlv+pk++ae++ ++ + ++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + Cucsa.193290.1 57 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGiGEiGR 151 89***************************9555568889************************************************65599999 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l++ ++r+ Cucsa.193290.1 152 DRLYIDWRRR 161 9999999997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-40 | 52 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.37E-30 | 54 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.58E-27 | 55 | 144 | No hit | No description |
PROSITE profile | PS50863 | 14.776 | 57 | 162 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-29 | 57 | 161 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-22 | 57 | 162 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 400 aa Download sequence Send to blast |
MNFGVNTLQN HHLQPRNRLD LIMMEPPEAE EEAGGGSNSG NGGRGGGGEV VEREHMFDKV 60 VTPSDVGKLN RLVIPKQHAE RFFPLDSSTN DKGLLLNFED RNGKSWRFRY SYWNSSQSYV 120 MTKGWSRFVK EKRLDAGDIV SFQRGIGEIG RDRLYIDWRR RPELPIHHYP ITTATTAIRP 180 SIVIPSGSGA TAAWGPLVWQ PLGVTTAGYH HQPAAVTPRD HAHLSRNNNN SNNNNNNGNG 240 MCCPYGYGSS SVETTSSGLV YLRTELGGKS SRRVIGTPRL GEDQELELEM DRNYNNYQMQ 300 QEYCSNGGGG ASMVVLQGNY SMENHHHHHK LNSNNNNNYS EEDTPVKKSR LRLFGVNMEM 360 ESPISSPSSD ECDLLLSTNP KTTTSTTQFQ LPSPSIYKV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-68 | 50 | 164 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-68 | 50 | 164 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 41 | 47 | GGRGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011654665.1 | 0.0 | PREDICTED: uncharacterized protein LOC101211271 | ||||
TrEMBL | A0A0A0KNK2 | 0.0 | A0A0A0KNK2_CUCSA; Uncharacterized protein | ||||
STRING | XP_008437475.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 3e-67 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.193290.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|