PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.190800.1

Common Name

Csa_7G450800, LOC101220200

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 552aa MW: 59452 Da PI: 8.6727

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.190800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cucsa.190800.1 93 FVCEICNKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	11.1	0.0013	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Cucsa.190800.1 170 WKCDKCSKKYAVQSDWKAHSKIC 192 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.98E-7	92	115	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	92	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	93	115	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	93	115	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	135	165	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.2E-4	158	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.98E-7	165	190	No hit	No description
SMART	SM00355	150	170	190	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MMMKGNFLSQ QQQQQIVVMD ENLSNLTSAS GEATASVSSA NKSEFPNQYF APQTTQQQQP 60 PPPKKKRNLP GNPDPDAEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK 120 LKQRSNKEII KKKVYVCPEV SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA 180 VQSDWKAHSK ICGTKEYRCD CGTLFSRRDS FITHRAFCDA LADESARSAM ALNPLLSSYN 240 HNNNNSNSQD HQFCNNLALK RDFDDTNNSN NNNHLRVEIP PWLQPSSDHL MVGSGGQGEN 300 NDETVNPNPS SNSSSRGCGA NRRSVGVGVG TPNNPNHPCE LYQSSSHISA TALLQKAAQM 360 GATMSSTTTT SGSFPRPHNL LHVSTGNFGE IGLWSGDVEI GRGGGGGGGG GGGGAVSCSS 420 SSCTDYGNKA AASASATASA SASASTTFLH DIINNSLSSP SPSHPNFLQQ HNSSFPDTAF 480 AAMHHHQHHH NVPIIPTTAP ASGGRSDGLT RDFLGLRPLS HGDILSLTGF GNCIVPNSSN 540 LHPQIQKPWQ G*

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MMMKGNFLSQ QQQQQIVVMD ENLSNLTSAS GEATASVSSA NKSEFPNQYF APQTTQQQQP  60
PPPKKKRNLP GNPDPDAEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK  120
LKQRSNKEII KKKVYVCPEV SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA  180
VQSDWKAHSK ICGTKEYRCD CGTLFSRRDS FITHRAFCDA LADESARSAM ALNPLLSSYN  240
HNNNNSNSQD HQFCNNLALK RDFDDTNNSN NNNHLRVEIP PWLQPSSDHL MVGSGGQGEN  300
NDETVNPNPS SNSSSRGCGA NRRSVGVGVG TPNNPNHPCE LYQSSSHISA TALLQKAAQM  360
GATMSSTTTT SGSFPRPHNL LHVSTGNFGE IGLWSGDVEI GRGGGGGGGG GGGGAVSCSS  420
SSCTDYGNKA AASASATASA SASASTTFLH DIINNSLSSP SPSHPNFLQQ HNSSFPDTAF  480
AAMHHHQHHH NVPIIPTTAP ASGGRSDGLT RDFLGLRPLS HGDILSLTGF GNCIVPNSSN  540
LHPQIQKPWQ G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	166	243	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-33	166	243	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681805	0.0	LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141684.2	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-119	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A0A0K7W2	0.0	A0A0A0K7W2_CUCSA; Uncharacterized protein
STRING	XP_004141684.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-104	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Cucsa.190800.1
Entrez Gene	101220200

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]