PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.189550.1

Common Name

Csa_2G100560, LOC101203068

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 277aa MW: 31259.6 Da PI: 7.5861

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.189550.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rFveav++LGG++kAtPk+++++m++ gL+l+h+kSHLQkYRl Cucsa.189550.1 18 KPRLKWTHDLHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.385	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-29	16	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-15	17	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-23	18	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-7	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-19	114	161	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MQNHHQQHMN LVLSTDAKPR LKWTHDLHQR FVEAVNHLGG ADKATPKSLM RVMGITGLSL 60 YHLKSHLQKY RLGKSQQAET NAQLKLEEMQ KKGGHIDGEE NKDRTQNQNK TENMKISEAL 120 EMQLQVQKRL QEQIEVQKHL QLKIEAQGKY LKIVLRKAQE TIAGYGCCSE ALEEAKAELS 180 QLASMVSSGC QSSCLSELTD STELNFKGIE RVGRRMCSIE SSLTSSETSE EAPITKKRKG 240 KEKEESSSVC EEDKELRMMD LNDTAIGFES KLIQFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	17	74	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	17	74	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	17	74	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	17	74	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	17	74	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	17	74	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	17	74	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	17	74	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681846	0.0	LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138915.1	0.0	PREDICTED: myb family transcription factor APL
Swissprot	F4I274	2e-70	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A0A0LJX4	0.0	A0A0A0LJX4_CUCSA; Uncharacterized protein
STRING	XP_004138915.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	2e-65	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.189550.1
Entrez Gene	101203068

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]