PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.189540.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 214aa MW: 24477.2 Da PI: 11.1297 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.8e-16 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v ++G+ +W++Ia+++ gR++k+c++rw++ Cucsa.189540.2 11 RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 56 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3e-18 | 63 | 107 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ + Cucsa.189540.2 63 RKAFTEEEEERLMQAHEMYGNK-WAMIARLFP-GRTDNGVKNHWHVV 107 789*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.236 | 6 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 11 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.31E-28 | 11 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-26 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.10E-12 | 14 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.026 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 63 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-21 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.14E-10 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAASKSKVCG RGHWRPAEDT KLKELVGLYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR 60 INRKAFTEEE EERLMQAHEM YGNKWAMIAR LFPGRTDNGV KNHWHVVMAR NCRQHFSSYR 120 RSSRNLTHSL SIASSALPTP PLPPTRSLSR PNHLPFHLLP RPDSLGMNCS DVFSLAQKQA 180 TKWKLYHPTA ATKRAQTMRI KLATTFITVH HIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-32 | 11 | 112 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681846 | 0.0 | LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138987.1 | 1e-111 | PREDICTED: transcription factor MYB44 | ||||
Swissprot | Q9LQX5 | 4e-70 | MY117_ARATH; Transcription factor MYB117 | ||||
TrEMBL | A0A0A0LHV6 | 1e-109 | A0A0A0LHV6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004138987.1 | 1e-110 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26780.1 | 3e-73 | myb domain protein 117 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.189540.2 |
Publications ? help Back to Top | |||
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