PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.189540.1 | ||||||||
Common Name | Csa_2G100550, LOC101221134 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 29982.8 Da PI: 8.855 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.6e-16 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v ++G+ +W++Ia+++ gR++k+c++rw++ Cucsa.189540.1 11 RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 56 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.1 | 4.3e-18 | 63 | 107 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ + Cucsa.189540.1 63 RKAFTEEEEERLMQAHEMYGNK-WAMIARLFP-GRTDNGVKNHWHVV 107 789*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.236 | 6 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 10 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.13E-28 | 11 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-15 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.54E-12 | 14 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.026 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 63 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-21 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.71E-10 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MAASKSKVCG RGHWRPAEDT KLKELVGLYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR 60 INRKAFTEEE EERLMQAHEM YGNKWAMIAR LFPGRTDNGV KNHWHVVMAR NCRQHFSSYR 120 RSSRNLTHSL SIASSALPTP PLPPTRSLSR PNHLPFHLLP RPGSETSNEM EVISSYSCNK 180 TSSNHENQTC NNIHYCPSYI MTEMQQRSNY SYNSHCQIPK AWDHHIIGSE GSSSVSEENG 240 VGNISEGMVV VEPVFIDFLG VGGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-32 | 11 | 112 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681846 | 0.0 | LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138987.1 | 0.0 | PREDICTED: transcription factor MYB44 | ||||
TrEMBL | A0A0A0LHV6 | 0.0 | A0A0A0LHV6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004138987.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26780.1 | 2e-72 | myb domain protein 117 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.189540.1 |
Entrez Gene | 101221134 |
Publications ? help Back to Top | |||
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