PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.177570.2 | ||||||||
Common Name | Csa_3G702640, LOC101208907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 203aa MW: 22826.4 Da PI: 7.0437 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.4 | 1.9e-16 | 136 | 188 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++++q Lee F++++++ +++ e A++l+L rqV vWFqNrRa+ Cucsa.177570.2 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRAR 188 678889**********************************************8 PP | |||||||
2 | HD-ZIP_I/II | 78.7 | 9.8e-26 | 136 | 189 | 1 | 54 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 +kk+rls++q+++LEesF+e+++L p++K e+ar+L+l+prqv+vWFqnrRAR+ Cucsa.177570.2 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARI 189 69***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-16 | 128 | 188 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.402 | 132 | 192 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-11 | 134 | 196 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.01E-13 | 136 | 188 | No hit | No description |
Pfam | PF00046 | 5.8E-14 | 136 | 188 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-16 | 141 | 188 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MELDLRLGND PSPSSHPTPL RFSLSFPSID LQHQAHNHIH QNHLLLHSLN SPPPPSAPAS 60 RPSSPTEGSG GGVFTEVISG ASADGGGEIG GRSSKGIVWS IGKNNREEER KGKSENELEE 120 EEEQEEMDMN MISSGRKKLR LSRQQSAFLE ESFKEHHTLY PKQKLEVARR LNLRPRQVEV 180 WFQNRRARIY VLYLTQNEVE TK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681835 | 1e-102 | LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064. | |||
GenBank | LN713258 | 1e-102 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149612.1 | 1e-114 | PREDICTED: homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A0A0LEY4 | 1e-113 | A0A0A0LEY4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149612.1 | 1e-114 | (Cucumis sativus) | ||||
STRING | XP_004161408.1 | 1e-114 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-25 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.177570.2 |
Entrez Gene | 101208907 |
Publications ? help Back to Top | |||
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